RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 LMNB1P20700 586 aa7.82□□□□□ -1.16
CD44-230ENST00000528922 EIF4A3P38919 411 aaKnown RBP7.82□□□□□ -1.16
CD44-230ENST00000528922 ID3Q02535 119 aa7.82□□□□□ -1.16
CD44-230ENST00000528922 GPAT2Q6NUI2 795 aa7.82□□□□□ -1.16
CD44-230ENST00000528922 NPM2Q86SE8 214 aaKnown RBP7.82□□□□□ -1.16
CD44-230ENST00000528922 KCNQ5Q9NR82 932 aa7.82□□□□□ -1.16
CD44-230ENST00000528922 DISC1Q9NRI5 854 aa7.82□□□□□ -1.16
CD44-230ENST00000528922 TPSG1Q9NRR2 321 aa7.82□□□□□ -1.16
CD44-230ENST00000528922 AP4E1Q9UPM8 1137 aa7.82□□□□□ -1.16
CD44-230ENST00000528922 FAM221AA4D161 298 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 DCDC2CA8MYV0 355 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 F13A1P00488 732 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 RAD51AP2Q09MP3 1159 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 LRFN4Q6PJG9 635 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 DYMQ7RTS9 669 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 CCDC84Q86UT8 332 aaPredicted RBP7.81□□□□□ -1.16
CD44-230ENST00000528922 GOLM1Q8NBJ4 401 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 ZNF296Q8WUU4 475 aaPredicted RBP7.81□□□□□ -1.16
CD44-230ENST00000528922 TP53INP1Q96A56 240 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 FANCD2OSQ96PS1 177 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 GSX1Q9H4S2 264 aaPredicted RBP7.81□□□□□ -1.16
CD44-230ENST00000528922 CSADQ9Y600 493 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 ACTL7BQ9Y614 415 aa7.81□□□□□ -1.16
CD44-230ENST00000528922 MSTNO14793 375 aa7.8□□□□□ -1.16
CD44-230ENST00000528922 GREM1O60565 184 aa7.8□□□□□ -1.16
CD44-230ENST00000528922 DOC2BQ14184 412 aa7.8□□□□□ -1.16
CD44-230ENST00000528922 C12orf40Q86WS4 652 aa7.8□□□□□ -1.16
CD44-230ENST00000528922 UTP4Q969X6 686 aaKnown RBP7.8□□□□□ -1.16
CD44-230ENST00000528922 PLPPR2Q96GM1 343 aa7.8□□□□□ -1.16
CD44-230ENST00000528922 MYRFLQ96LU7 910 aa7.8□□□□□ -1.16
CD44-230ENST00000528922 FAM105AQ9NUU6 356 aa7.8□□□□□ -1.16
CD44-230ENST00000528922 CILPO75339 1184 aa7.79□□□□□ -1.16
CD44-230ENST00000528922 ASPAP45381 313 aa7.79□□□□□ -1.16
CD44-230ENST00000528922 HNRNPUQ00839 825 aaKnown RBP eCLIP7.79□□□□□ -1.16
CD44-230ENST00000528922 RING1Q06587 406 aa7.79□□□□□ -1.16
CD44-230ENST00000528922 UVSSAQ2YD98 709 aa7.79□□□□□ -1.16
CD44-230ENST00000528922 SGO2Q562F6 1265 aa7.79□□□□□ -1.16
CD44-230ENST00000528922 SNAP47Q5SQN1 464 aa7.79□□□□□ -1.16
CD44-230ENST00000528922 CDPF1Q6NVV7 123 aa7.79□□□□□ -1.16
CD44-230ENST00000528922 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.79□□□□□ -1.16
CD44-230ENST00000528922 FBXO27Q8NI29 283 aa7.79□□□□□ -1.16
CD44-230ENST00000528922 GATAD2BQ8WXI9 593 aa7.79□□□□□ -1.16
CD44-230ENST00000528922 GFRA2O00451 464 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 GAS2O43903 313 aaKnown RBP7.78□□□□□ -1.16
CD44-230ENST00000528922 BMP3P12645 472 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 ERVK-24P63145 666 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 WIPI1Q5MNZ9 446 aaPredicted RBP7.78□□□□□ -1.16
CD44-230ENST00000528922 FAM196AQ6ZSG2 479 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 CYFIP1Q7L576 1253 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 FAM20CQ8IXL6 584 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.78□□□□□ -1.16
CD44-230ENST00000528922 HIF3AQ9Y2N7 669 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 CC2D2AQ9P2K1 1620 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 USP11P51784 963 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 RPL6Q02878 288 aaKnown RBP7.78□□□□□ -1.16
CD44-230ENST00000528922 TTLL4Q14679 1199 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 PPM1JQ5JR12 505 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 HDXQ7Z353 690 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 ZNF654Q8IZM8 581 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 FBLIM1Q8WUP2 373 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 EAF1Q96JC9 268 aaPredicted RBP7.78□□□□□ -1.16
CD44-230ENST00000528922 SPON2Q9BUD6 331 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 ATXN3LQ9H3M9 355 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 SUPT16HQ9Y5B9 1047 aaKnown RBP7.78□□□□□ -1.16
CD44-230ENST00000528922 SNCAIPQ9Y6H5 919 aa7.78□□□□□ -1.16
CD44-230ENST00000528922 CUX2O14529 1486 aa7.77□□□□□ -1.17
CD44-230ENST00000528922 UNC13AQ9UPW8 1703 aa7.77□□□□□ -1.17
CD44-230ENST00000528922 TLR3O15455 904 aaKnown RBP7.77□□□□□ -1.17
CD44-230ENST00000528922 NEFMP07197 916 aa7.77□□□□□ -1.17
CD44-230ENST00000528922 ERCC5P28715 1186 aaPredicted RBP7.77□□□□□ -1.17
CD44-230ENST00000528922 NTF4P34130 210 aa7.77□□□□□ -1.17
CD44-230ENST00000528922 CRKP46108 304 aa7.77□□□□□ -1.17
CD44-230ENST00000528922 KIAA0825Q8IV33 1275 aa7.77□□□□□ -1.17
CD44-230ENST00000528922 ELMO3Q96BJ8 720 aa7.77□□□□□ -1.17
CD44-230ENST00000528922 TGIF2Q9GZN2 237 aa7.77□□□□□ -1.17
CD44-230ENST00000528922 ACSS3Q9H6R3 686 aa7.77□□□□□ -1.17
CD44-230ENST00000528922 UBP1Q9NZI7 540 aa7.77□□□□□ -1.17
CD44-230ENST00000528922 DHX15O43143 795 aaKnown RBP7.76□□□□□ -1.17
CD44-230ENST00000528922 IGHA1P01876 353 aa7.76□□□□□ -1.17
CD44-230ENST00000528922 HCLS1P14317 486 aaPredicted RBP7.76□□□□□ -1.17
CD44-230ENST00000528922 RAB6AP20340 208 aa7.76□□□□□ -1.17
CD44-230ENST00000528922 MAP4P27816 1152 aaKnown RBP7.76□□□□□ -1.17
CD44-230ENST00000528922 NKAPLQ5M9Q1 402 aa7.76□□□□□ -1.17
CD44-230ENST00000528922 RNF214Q8ND24 703 aa7.76□□□□□ -1.17
CD44-230ENST00000528922 ACBD3Q9H3P7 528 aa7.76□□□□□ -1.17
CD44-230ENST00000528922 DCAF1Q9Y4B6 1507 aa7.75□□□□□ -1.17
CD44-230ENST00000528922 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.75□□□□□ -1.17
CD44-230ENST00000528922 NFICP08651 508 aa7.75□□□□□ -1.17
CD44-230ENST00000528922 RSPO4Q2I0M5 234 aaPredicted RBP7.75□□□□□ -1.17
CD44-230ENST00000528922 ZBTB37Q5TC79 503 aa7.75□□□□□ -1.17
CD44-230ENST00000528922 PRR23CQ6ZRP0 262 aa7.75□□□□□ -1.17
CD44-230ENST00000528922 UBE3DQ7Z6J8 389 aa7.75□□□□□ -1.17
CD44-230ENST00000528922 EZH1Q92800 747 aaPredicted RBP7.75□□□□□ -1.17
CD44-230ENST00000528922 ISL2Q96A47 359 aa7.75□□□□□ -1.17
CD44-230ENST00000528922 NT5C1AQ9BXI3 368 aa7.75□□□□□ -1.17
CD44-230ENST00000528922 SEMA6CQ9H3T2 930 aa7.75□□□□□ -1.17
CD44-230ENST00000528922 PIDD1Q9HB75 910 aa7.75□□□□□ -1.17
CD44-230ENST00000528922 PRAMEF27A3QJZ7 478 aa7.74□□□□□ -1.17
CD44-230ENST00000528922 FANCGO15287 622 aa7.74□□□□□ -1.17
CD44-230ENST00000528922 BPNT1O95861 308 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms