RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	PPAT	Q06203	517 aa		11.74	□□□□□ -0.53
CHD7-208	ENST00000528280	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD7-208	ENST00000528280	MIGA2	Q7L4E1	593 aa		11.74	□□□□□ -0.53
CHD7-208	ENST00000528280	CLASRP	Q8N2M8	674 aa	Known RBP	11.74	□□□□□ -0.53
CHD7-208	ENST00000528280	KIF1BP	Q96EK5	621 aa		11.74	□□□□□ -0.53
CHD7-208	ENST00000528280	DBNDD2	Q9BQY9	259 aa		11.74	□□□□□ -0.53
CHD7-208	ENST00000528280	FAM198A	Q9UFP1	575 aa		11.74	□□□□□ -0.53
CHD7-208	ENST00000528280	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.74	□□□□□ -0.53
CHD7-208	ENST00000528280	TBC1D12	O60347	775 aa		11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	RGS3	P49796	1198 aa		11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	MAP3K10	Q02779	954 aa		11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	NFIA	Q12857	509 aa		11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	PPIL2	Q13356	520 aa		11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	SNAPC2	Q13487	334 aa		11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	NAA16	Q6N069	864 aa	Predicted RBP	11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	TBC1D9	Q6ZT07	1266 aa		11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	EAF2	Q96CJ1	260 aa	Predicted RBP	11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	MS4A4A	Q96JQ5	239 aa		11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	TRIOBP	Q9H2D6	2365 aa		11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	CUL9	Q8IWT3	2517 aa		11.73	□□□□□ -0.53
CHD7-208	ENST00000528280	PPP4C	P60510	307 aa		11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	TTF1	Q15361	905 aa	Predicted RBP	11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	NOL9	Q5SY16	702 aa	Known RBP	11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	CDAN1	Q8IWY9	1227 aa		11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	RHPN1	Q8TCX5	695 aa		11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	ZKSCAN4	Q969J2	545 aa	Predicted RBP	11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	OTUD5	Q96G74	571 aa		11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	CCDC8	Q9H0W5	538 aa	Predicted RBP	11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	DHX36	Q9H2U1	1008 aa	Known RBP	11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	ZFYVE28	Q9HCC9	887 aa		11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	COLQ	Q9Y215	455 aa	Predicted RBP	11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	EXOC6B	Q9Y2D4	811 aa		11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	CEP290	O15078	2479 aa		11.72	□□□□□ -0.53
CHD7-208	ENST00000528280	MYH2	Q9UKX2	1941 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	CCL15-CCL14	A0A0B4J2E2	113 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	IGF2BP3	O00425	579 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	CTNND1	O60716	968 aa	Known RBP	11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	CYP2E1	P05181	493 aa	Predicted RBP	11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	IFIT2	P09913	472 aa	Known RBP	11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	GJA5	P36382	358 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	RHBDL3	P58872	404 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	MAP3K12	Q12852	859 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	CCL15	Q16663	113 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	AACS	Q86V21	672 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	SLC17A8	Q8NDX2	589 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	ERO1A	Q96HE7	468 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	PICK1	Q9NRD5	415 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	SNRK	Q9NRH2	765 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	DBNL	Q9UJU6	430 aa	Known RBP	11.71	□□□□□ -0.53
CHD7-208	ENST00000528280	SNCAIP	Q9Y6H5	919 aa		11.71	□□□□□ -0.53
CHD7-208	ENST00000528280		A0A0C4DFX4	3053 aa		11.71	□□□□□ -0.54
CHD7-208	ENST00000528280	AK9	Q5TCS8	1911 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	CXCL11	O14625	94 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	IRF6	O14896	467 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	ZAP70	P43403	619 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	PICALM	Q13492	652 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	PI16	Q6UXB8	463 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	FOXP4	Q8IVH2	680 aa	Predicted RBP	11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	ZFPM1	Q8IX07	1006 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	TEX11	Q8IYF3	940 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	PTPN18	Q99952	460 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	TBC1D2	Q9BYX2	928 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	PI4KB	Q9UBF8	816 aa		11.7	□□□□□ -0.54
CHD7-208	ENST00000528280	POTEF	A5A3E0	1075 aa		11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	PHF20L1	A8MW92	1017 aa		11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	INPP5B	P32019	993 aa		11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	SP3	Q02447	781 aa		11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	TAF1C	Q15572	869 aa	Predicted RBP	11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	FASTKD5	Q7L8L6	764 aa	Known RBP	11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	SCYL3	Q8IZE3	742 aa		11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	ZNF384	Q8TF68	577 aa		11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	BRI3BP	Q8WY22	251 aa		11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	HERC5	Q9UII4	1024 aa	Known RBP	11.69	□□□□□ -0.54
CHD7-208	ENST00000528280	ATRNL1	Q5VV63	1379 aa		11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	DDTL	A6NHG4	134 aa	Predicted RBP	11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	IDH1	O75874	414 aa	Known RBP	11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	CYP7A1	P22680	504 aa		11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	CRHR2	Q13324	411 aa		11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	KIF22	Q14807	665 aa		11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	ANKRD23	Q86SG2	305 aa		11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	SIRT2	Q8IXJ6	389 aa		11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	CNKSR2	Q8WXI2	1034 aa		11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	OSBPL5	Q9H0X9	879 aa	Predicted RBP	11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	IL1RAPL2	Q9NP60	686 aa		11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	DDX4	Q9NQI0	724 aa	Known RBP	11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	KCNH4	Q9UQ05	1017 aa		11.68	□□□□□ -0.54
CHD7-208	ENST00000528280	CENPF	P49454	3210 aa		11.67	□□□□□ -0.54
CHD7-208	ENST00000528280	TLR2	O60603	784 aa		11.67	□□□□□ -0.54
CHD7-208	ENST00000528280	GNRH1	P01148	92 aa		11.67	□□□□□ -0.54
CHD7-208	ENST00000528280	PTPRA	P18433	802 aa		11.67	□□□□□ -0.54
CHD7-208	ENST00000528280	SH3BP5L	Q7L8J4	393 aa		11.67	□□□□□ -0.54
CHD7-208	ENST00000528280	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	11.67	□□□□□ -0.54
CHD7-208	ENST00000528280	TRIM34	Q9BYJ4	488 aa		11.67	□□□□□ -0.54
CHD7-208	ENST00000528280	LRRCC1	Q9C099	1032 aa		11.67	□□□□□ -0.54
CHD7-208	ENST00000528280	R3HDML	Q9H3Y0	253 aa		11.67	□□□□□ -0.54
CHD7-208	ENST00000528280	PIH1D3	Q9NQM4	214 aa	Known RBP	11.67	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms