RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CYP2C8P10632 490 aa29.27■■■□□ 2.28
CPSF1-202ENST00000527827 MAP3K10Q02779 954 aa29.27■■■□□ 2.28
CPSF1-202ENST00000527827 PARK7Q99497 189 aaKnown RBP29.27■■■□□ 2.28
CPSF1-202ENST00000527827 ZHX2Q9Y6X8 837 aa29.27■■■□□ 2.28
CPSF1-202ENST00000527827 PHIPQ8WWQ0 1821 aa29.27■■■□□ 2.28
CPSF1-202ENST00000527827 PDS5AQ29RF7 1337 aaKnown RBP29.26■■■□□ 2.27
CPSF1-202ENST00000527827 MYPNQ86TC9 1320 aa29.26■■■□□ 2.27
CPSF1-202ENST00000527827 SLURP2P0DP57 97 aa29.26■■■□□ 2.27
CPSF1-202ENST00000527827 PTPRAP18433 802 aa29.26■■■□□ 2.27
CPSF1-202ENST00000527827 GRK4P32298 578 aa29.26■■■□□ 2.27
CPSF1-202ENST00000527827 RAET1EQ8TD07 263 aa29.26■■■□□ 2.27
CPSF1-202ENST00000527827 FAM163AQ96GL9 167 aaPredicted RBP29.26■■■□□ 2.27
CPSF1-202ENST00000527827 DDX4Q9NQI0 724 aaKnown RBP29.26■■■□□ 2.27
CPSF1-202ENST00000527827 COLQQ9Y215 455 aaPredicted RBP29.26■■■□□ 2.27
CPSF1-202ENST00000527827 DOCK1Q14185 1865 aa29.25■■■□□ 2.27
CPSF1-202ENST00000527827 A0A0G2JLL6 359 aaPredicted RBP29.25■■■□□ 2.27
CPSF1-202ENST00000527827 DDTLA6NHG4 134 aaPredicted RBP29.25■■■□□ 2.27
CPSF1-202ENST00000527827 FXR1P51114 621 aaKnown RBP eCLIP29.25■■■□□ 2.27
CPSF1-202ENST00000527827 PRRT2Q7Z6L0 340 aaPredicted RBP29.25■■■□□ 2.27
CPSF1-202ENST00000527827 DZIP1Q86YF9 867 aaKnown RBP29.25■■■□□ 2.27
CPSF1-202ENST00000527827 ABCF2Q9UG63 623 aa29.25■■■□□ 2.27
CPSF1-202ENST00000527827 PICK1Q9NRD5 415 aa29.24■■■□□ 2.27
CPSF1-202ENST00000527827 AFG3L2Q9Y4W6 797 aa29.24■■■□□ 2.27
CPSF1-202ENST00000527827 FASTKD5Q7L8L6 764 aaKnown RBP29.23■■■□□ 2.27
CPSF1-202ENST00000527827 ZSCAN29Q8IWY8 852 aaPredicted RBP29.23■■■□□ 2.27
CPSF1-202ENST00000527827 A0A1B0GUL7 405 aa29.22■■■□□ 2.27
CPSF1-202ENST00000527827 H0YGN5 161 aa29.22■■■□□ 2.27
CPSF1-202ENST00000527827 BTDP43251 543 aa29.22■■■□□ 2.27
CPSF1-202ENST00000527827 FCGRTP55899 365 aa29.22■■■□□ 2.27
CPSF1-202ENST00000527827 PRKCZQ05513 592 aa29.22■■■□□ 2.27
CPSF1-202ENST00000527827 TFCP2Q12800 502 aa29.22■■■□□ 2.27
CPSF1-202ENST00000527827 SLF2Q8IX21 1173 aa29.22■■■□□ 2.27
CPSF1-202ENST00000527827 XAGE2Q96GT9 111 aa29.22■■■□□ 2.27
CPSF1-202ENST00000527827 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP29.22■■■□□ 2.27
CPSF1-202ENST00000527827 MROH7-TTC4A0A0A0MT08 1334 aa29.21■■■□□ 2.27
CPSF1-202ENST00000527827 RARSP54136 660 aaKnown RBP29.21■■■□□ 2.27
CPSF1-202ENST00000527827 SPTY2D1Q68D10 685 aaPredicted RBP29.21■■■□□ 2.27
CPSF1-202ENST00000527827 ZNF384Q8TF68 577 aa29.21■■■□□ 2.27
CPSF1-202ENST00000527827 CCL5P13501 91 aa29.2■■■□□ 2.26
CPSF1-202ENST00000527827 RHBDL3P58872 404 aa29.2■■■□□ 2.26
CPSF1-202ENST00000527827 PICALMQ13492 652 aa29.2■■■□□ 2.26
CPSF1-202ENST00000527827 GADL1Q6ZQY3 521 aa29.2■■■□□ 2.26
CPSF1-202ENST00000527827 GABRQQ9UN88 632 aa29.2■■■□□ 2.26
CPSF1-202ENST00000527827 AKAP2Q9Y2D5 859 aa29.2■■■□□ 2.26
CPSF1-202ENST00000527827 GPR75-ASB3A0A0A6YYF3 556 aa29.19■■■□□ 2.26
CPSF1-202ENST00000527827 SRGAP3O43295 1099 aa29.19■■■□□ 2.26
CPSF1-202ENST00000527827 CTNND1O60716 968 aaKnown RBP29.19■■■□□ 2.26
CPSF1-202ENST00000527827 GJB1P08034 283 aa29.19■■■□□ 2.26
CPSF1-202ENST00000527827 GJA8P48165 433 aa29.19■■■□□ 2.26
CPSF1-202ENST00000527827 MECOMQ03112 1051 aa29.19■■■□□ 2.26
CPSF1-202ENST00000527827 MTX1Q13505 466 aa29.19■■■□□ 2.26
CPSF1-202ENST00000527827 NKX2-3Q8TAU0 364 aa29.19■■■□□ 2.26
CPSF1-202ENST00000527827 FRMD4AQ9P2Q2 1039 aaPredicted RBP29.19■■■□□ 2.26
CPSF1-202ENST00000527827 SLC45A1Q9Y2W3 748 aa29.19■■■□□ 2.26
CPSF1-202ENST00000527827 TRIOBPQ9H2D6 2365 aa29.18■■■□□ 2.26
CPSF1-202ENST00000527827 GNAI3P08754 354 aa29.18■■■□□ 2.26
CPSF1-202ENST00000527827 MVPQ14764 893 aaKnown RBP29.18■■■□□ 2.26
CPSF1-202ENST00000527827 UBE2Q1Q7Z7E8 422 aa29.18■■■□□ 2.26
CPSF1-202ENST00000527827 ARHGAP45Q92619 1136 aa29.18■■■□□ 2.26
CPSF1-202ENST00000527827 ERICH6Q7L0X2 663 aa29.17■■■□□ 2.26
CPSF1-202ENST00000527827 CCDC84Q86UT8 332 aaPredicted RBP29.17■■■□□ 2.26
CPSF1-202ENST00000527827 RNF208Q9H0X6 261 aa29.17■■■□□ 2.26
CPSF1-202ENST00000527827 BIN2Q9UBW5 565 aaPredicted RBP29.17■■■□□ 2.26
CPSF1-202ENST00000527827 UBXN2AP68543 259 aa29.16■■■□□ 2.26
CPSF1-202ENST00000527827 SLAIN1Q8ND83 568 aa29.16■■■□□ 2.26
CPSF1-202ENST00000527827 HMG20BQ9P0W2 317 aa29.16■■■□□ 2.26
CPSF1-202ENST00000527827 TRIM75PA6NK02 468 aa29.15■■■□□ 2.26
CPSF1-202ENST00000527827 TBC1D12O60347 775 aa29.15■■■□□ 2.26
CPSF1-202ENST00000527827 NPM3O75607 178 aaKnown RBP29.15■■■□□ 2.26
CPSF1-202ENST00000527827 PI16Q6UXB8 463 aa29.15■■■□□ 2.26
CPSF1-202ENST00000527827 NEUROD6Q96NK8 337 aa29.15■■■□□ 2.26
CPSF1-202ENST00000527827 DOCK3Q8IZD9 2030 aa29.15■■■□□ 2.26
CPSF1-202ENST00000527827 FAM196BA6NMK8 535 aa29.13■■■□□ 2.25
CPSF1-202ENST00000527827 FLT3LGP49771 235 aa29.13■■■□□ 2.25
CPSF1-202ENST00000527827 TBC1D9Q6ZT07 1266 aa29.13■■■□□ 2.25
CPSF1-202ENST00000527827 DPF3Q92784 378 aa29.13■■■□□ 2.25
CPSF1-202ENST00000527827 NSUN4Q96CB9 384 aaKnown RBP29.13■■■□□ 2.25
CPSF1-202ENST00000527827 UNC93B1Q9H1C4 597 aa29.13■■■□□ 2.25
CPSF1-202ENST00000527827 AGTPBP1Q9UPW5 1226 aa29.13■■■□□ 2.25
CPSF1-202ENST00000527827 ADCY3O60266 1144 aa29.12■■■□□ 2.25
CPSF1-202ENST00000527827 SPATA5Q8NB90 893 aa29.12■■■□□ 2.25
CPSF1-202ENST00000527827 SMCR8Q8TEV9 937 aaPredicted RBP29.12■■■□□ 2.25
CPSF1-202ENST00000527827 U2AF1L4Q8WU68 220 aaKnown RBP29.12■■■□□ 2.25
CPSF1-202ENST00000527827 ATAD5Q96QE3 1844 aa29.12■■■□□ 2.25
CPSF1-202ENST00000527827 TREML2Q5T2D2 321 aa29.11■■■□□ 2.25
CPSF1-202ENST00000527827 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.11■■■□□ 2.25
CPSF1-202ENST00000527827 COL2A1P02458 1487 aaPredicted RBP29.1■■■□□ 2.25
CPSF1-202ENST00000527827 LDHCP07864 332 aa29.1■■■□□ 2.25
CPSF1-202ENST00000527827 ELNP15502 786 aa29.1■■■□□ 2.25
CPSF1-202ENST00000527827 ARID4AP29374 1257 aaPredicted RBP29.1■■■□□ 2.25
CPSF1-202ENST00000527827 CHRDL2Q6WN34 429 aa29.1■■■□□ 2.25
CPSF1-202ENST00000527827 OSBPL5Q9H0X9 879 aaPredicted RBP29.1■■■□□ 2.25
CPSF1-202ENST00000527827 TNNQ9UQP3 1299 aa29.1■■■□□ 2.25
CPSF1-202ENST00000527827 LOC285556D6RIA3 1793 aa29.1■■■□□ 2.25
CPSF1-202ENST00000527827 TNPO2O14787 897 aaKnown RBP29.09■■■□□ 2.25
CPSF1-202ENST00000527827 MAP4K4O95819 1239 aaPredicted RBP29.09■■■□□ 2.25
CPSF1-202ENST00000527827 GSTO1P78417 241 aa29.09■■■□□ 2.25
CPSF1-202ENST00000527827 IRF5Q13568 498 aa29.09■■■□□ 2.25
CPSF1-202ENST00000527827 PXYLP1Q8TE99 480 aa29.09■■■□□ 2.25
CPSF1-202ENST00000527827 PNMA6EA0A0J9YXQ4 647 aa29.08■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms