RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 CCDC9Q9Y3X0 531 aaKnown RBP8.13□□□□□ -1.11
CD44-223ENST00000526553 NFICP08651 508 aa8.12□□□□□ -1.11
CD44-223ENST00000526553 LMNB1P20700 586 aa8.12□□□□□ -1.11
CD44-223ENST00000526553 MAP3K11Q16584 847 aa8.12□□□□□ -1.11
CD44-223ENST00000526553 PCDHA4Q9UN74 947 aa8.12□□□□□ -1.11
CD44-223ENST00000526553 TTLL4Q14679 1199 aa8.11□□□□□ -1.11
CD44-223ENST00000526553 NFKBIBQ15653 356 aa8.11□□□□□ -1.11
CD44-223ENST00000526553 RNF214Q8ND24 703 aa8.11□□□□□ -1.11
CD44-223ENST00000526553 PHC3Q8NDX5 983 aa8.11□□□□□ -1.11
CD44-223ENST00000526553 TFE3P19532 575 aaPredicted RBP8.1□□□□□ -1.11
CD44-223ENST00000526553 PTPN11Q06124 597 aaPredicted RBP8.1□□□□□ -1.11
CD44-223ENST00000526553 RING1Q06587 406 aa8.1□□□□□ -1.11
CD44-223ENST00000526553 PWP1Q13610 501 aa8.1□□□□□ -1.11
CD44-223ENST00000526553 SEZ6L2Q6UXD5 910 aa8.1□□□□□ -1.11
CD44-223ENST00000526553 SMYD4Q8IYR2 804 aaPredicted RBP8.1□□□□□ -1.11
CD44-223ENST00000526553 RSRP1Q9BUV0 290 aa8.1□□□□□ -1.11
CD44-223ENST00000526553 MIR1-1HGQ9H1L0 117 aa8.1□□□□□ -1.11
CD44-223ENST00000526553 PRKAG2Q9UGJ0 569 aa8.1□□□□□ -1.11
CD44-223ENST00000526553 RNF112Q9ULX5 631 aa8.1□□□□□ -1.11
CD44-223ENST00000526553 DAGLAQ9Y4D2 1042 aa8.1□□□□□ -1.11
CD44-223ENST00000526553 PCDHB5Q9Y5E4 795 aa8.1□□□□□ -1.11
CD44-223ENST00000526553 NEFMP07197 916 aa8.09□□□□□ -1.11
CD44-223ENST00000526553 VAMP1P23763 118 aa8.09□□□□□ -1.11
CD44-223ENST00000526553 ZAR1Q86SH2 424 aa8.09□□□□□ -1.11
CD44-223ENST00000526553 ZDHHC13Q8IUH4 622 aa8.09□□□□□ -1.11
CD44-223ENST00000526553 GIMAP7Q8NHV1 300 aa8.09□□□□□ -1.11
CD44-223ENST00000526553 ELMO3Q96BJ8 720 aa8.09□□□□□ -1.11
CD44-223ENST00000526553 MFSD14AQ96MC6 490 aa8.09□□□□□ -1.11
CD44-223ENST00000526553 TLR6Q9Y2C9 796 aa8.09□□□□□ -1.11
CD44-223ENST00000526553 SNCAIPQ9Y6H5 919 aa8.09□□□□□ -1.11
CD44-223ENST00000526553 DCDC2CA8MYV0 355 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 FANCGO15287 622 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 HCLS1P14317 486 aaPredicted RBP8.08□□□□□ -1.12
CD44-223ENST00000526553 LMNB2Q03252 620 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 SEPT6Q14141 434 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 CPSF6Q16630 551 aaKnown RBP eCLIP8.08□□□□□ -1.12
CD44-223ENST00000526553 PPM1JQ5JR12 505 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 ZMYM1Q5SVZ6 1142 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 LDLRAD1Q5T700 205 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 LRFN4Q6PJG9 635 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 ERMP1Q7Z2K6 904 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 HDXQ7Z353 690 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 CCDC84Q86UT8 332 aaPredicted RBP8.08□□□□□ -1.12
CD44-223ENST00000526553 SHKBP1Q8TBC3 707 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 GATA6Q92908 595 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 ISL2Q96A47 359 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 RHOVQ96L33 236 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 PCOLCE2Q9UKZ9 415 aa8.08□□□□□ -1.12
CD44-223ENST00000526553 RNGTTO60942 597 aaKnown RBP8.07□□□□□ -1.12
CD44-223ENST00000526553 NTF4P34130 210 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 INPP5AQ14642 412 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 WIPI1Q5MNZ9 446 aaPredicted RBP8.07□□□□□ -1.12
CD44-223ENST00000526553 ZBTB37Q5TC79 503 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.07□□□□□ -1.12
CD44-223ENST00000526553 CYFIP1Q7L576 1253 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 C12orf40Q86WS4 652 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 RELL1Q8IUW5 271 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 PLPPR2Q96GM1 343 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 TBC1D32Q96NH3 1257 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 TMEM74Q96NL1 305 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 C1GALT1Q9NS00 363 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 CSADQ9Y600 493 aa8.07□□□□□ -1.12
CD44-223ENST00000526553 DYNC1LI2O43237 492 aaPredicted RBP8.06□□□□□ -1.12
CD44-223ENST00000526553 F13BP05160 661 aa8.06□□□□□ -1.12
CD44-223ENST00000526553 ADMP35318 185 aa8.06□□□□□ -1.12
CD44-223ENST00000526553 TSNAXIP1Q2TAA8 658 aa8.06□□□□□ -1.12
CD44-223ENST00000526553 DIEXFQ68CQ4 756 aaKnown RBP8.06□□□□□ -1.12
CD44-223ENST00000526553 HS2ST1Q7LGA3 356 aa8.06□□□□□ -1.12
CD44-223ENST00000526553 TMEM87AQ8NBN3 555 aa8.06□□□□□ -1.12
CD44-223ENST00000526553 METTL22Q9BUU2 404 aaPredicted RBP8.06□□□□□ -1.12
CD44-223ENST00000526553 PICK1Q9NRD5 415 aa8.06□□□□□ -1.12
CD44-223ENST00000526553 TACC3Q9Y6A5 838 aa8.06□□□□□ -1.12
CD44-223ENST00000526553 WDR64B1ANS9 1081 aa8.05□□□□□ -1.12
CD44-223ENST00000526553 GBP2P32456 591 aaPredicted RBP8.05□□□□□ -1.12
CD44-223ENST00000526553 CAMK2GQ13555 558 aaPredicted RBP8.05□□□□□ -1.12
CD44-223ENST00000526553 FBXL6Q8N531 539 aa8.05□□□□□ -1.12
CD44-223ENST00000526553 KCT2Q8NC54 265 aa8.05□□□□□ -1.12
CD44-223ENST00000526553 BACH2Q9BYV9 841 aa8.05□□□□□ -1.12
CD44-223ENST00000526553 ATG3Q9NT62 314 aa8.05□□□□□ -1.12
CD44-223ENST00000526553 PRR19A6NJB7 356 aa8.04□□□□□ -1.12
CD44-223ENST00000526553 TGFB1P01137 390 aa8.04□□□□□ -1.12
CD44-223ENST00000526553 PF4P02776 101 aa8.04□□□□□ -1.12
CD44-223ENST00000526553 CDK8P49336 464 aa8.04□□□□□ -1.12
CD44-223ENST00000526553 CYP27A1Q02318 531 aa8.04□□□□□ -1.12
CD44-223ENST00000526553 RPL6Q02878 288 aaKnown RBP8.04□□□□□ -1.12
CD44-223ENST00000526553 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.04□□□□□ -1.12
CD44-223ENST00000526553 SSU72Q9NP77 194 aaKnown RBP8.04□□□□□ -1.12
CD44-223ENST00000526553 METTL5Q9NRN9 209 aaKnown RBP8.04□□□□□ -1.12
CD44-223ENST00000526553 KBTBD4Q9NVX7 518 aa8.04□□□□□ -1.12
CD44-223ENST00000526553 PRAMEF27A3QJZ7 478 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 F6X3S4 739 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 GFRA2O00451 464 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 RECKO95980 971 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 SHISA5Q8N114 240 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 ZNF507Q8TCN5 953 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 GATAD2BQ8WXI9 593 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 OSBPL1AQ9BXW6 950 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 WNT10AQ9GZT5 417 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 LGR6Q9HBX8 967 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 KCNQ5Q9NR82 932 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms