RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 RNF225M0QZC1 329 aaPredicted RBP6.38□□□□□ -1.39
CD44-218ENST00000525469 PLA2G4AP47712 749 aa6.38□□□□□ -1.39
CD44-218ENST00000525469 CIAPIN1Q6FI81 312 aa6.38□□□□□ -1.39
CD44-218ENST00000525469 FIGNL1Q6PIW4 674 aa6.38□□□□□ -1.39
CD44-218ENST00000525469 SVOPQ8N4V2 548 aa6.38□□□□□ -1.39
CD44-218ENST00000525469 CALR3Q96L12 384 aaKnown RBP6.38□□□□□ -1.39
CD44-218ENST00000525469 CUEDC1Q9NWM3 386 aaPredicted RBP6.38□□□□□ -1.39
CD44-218ENST00000525469 SERTAD1Q9UHV2 236 aa6.38□□□□□ -1.39
CD44-218ENST00000525469 CHMP3Q9Y3E7 222 aa6.38□□□□□ -1.39
CD44-218ENST00000525469 PCDHGA11Q9Y5H2 935 aa6.38□□□□□ -1.39
CD44-218ENST00000525469 RNF123Q5XPI4 1314 aa6.38□□□□□ -1.39
CD44-218ENST00000525469 ANKRD31Q8N7Z5 1873 aa6.38□□□□□ -1.39
CD44-218ENST00000525469 CDK2AP1O14519 115 aa6.37□□□□□ -1.39
CD44-218ENST00000525469 TPM2P07951 284 aa6.37□□□□□ -1.39
CD44-218ENST00000525469 SLURP2P0DP57 97 aa6.37□□□□□ -1.39
CD44-218ENST00000525469 KRT76Q01546 638 aa6.37□□□□□ -1.39
CD44-218ENST00000525469 AAMPQ13685 434 aa6.37□□□□□ -1.39
CD44-218ENST00000525469 DBN1Q16643 649 aa6.37□□□□□ -1.39
CD44-218ENST00000525469 DEPDC4Q8N2C3 294 aa6.37□□□□□ -1.39
CD44-218ENST00000525469 GTPBP3Q969Y2 492 aaKnown RBP6.37□□□□□ -1.39
CD44-218ENST00000525469 PDCL3Q9H2J4 239 aa6.37□□□□□ -1.39
CD44-218ENST00000525469 ENAMQ9NRM1 1142 aa6.37□□□□□ -1.39
CD44-218ENST00000525469 NARFQ9UHQ1 456 aa6.37□□□□□ -1.39
CD44-218ENST00000525469 ARFGEF2Q9Y6D5 1785 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 KIF24Q5T7B8 1368 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 ZNF541Q9H0D2 1346 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 PALM3A6NDB9 673 aaPredicted RBP6.36□□□□□ -1.39
CD44-218ENST00000525469 TMEM229AB2RXF0 380 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 CELF2O95319 508 aaKnown RBP6.36□□□□□ -1.39
CD44-218ENST00000525469 NOGQ13253 232 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 MTFR1Q15390 333 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 CCDC93Q567U6 631 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 AKAP4Q5JQC9 854 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 RNFT1Q5M7Z0 435 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 CST9Q5W186 159 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 CTU1Q7Z7A3 348 aaKnown RBP6.36□□□□□ -1.39
CD44-218ENST00000525469 GPC2Q8N158 579 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 SLC17A8Q8NDX2 589 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 ADAMTS19Q8TE59 1207 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 JDP2Q8WYK2 163 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 ANP32BQ92688 251 aaKnown RBP6.36□□□□□ -1.39
CD44-218ENST00000525469 HHIPL1Q96JK4 782 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 BRIP1Q9BX63 1249 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 CFHR5Q9BXR6 569 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 CRISPLD1Q9H336 500 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 GGNBP2Q9H3C7 697 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 DNAAF2Q9NVR5 837 aaKnown RBP6.36□□□□□ -1.39
CD44-218ENST00000525469 ZDHHC3Q9NYG2 299 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 GJA3Q9Y6H8 435 aa6.36□□□□□ -1.39
CD44-218ENST00000525469 KIF20BQ96Q89 1820 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 TRAF5O00463 557 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 STAU1O95793 577 aaKnown RBP6.35□□□□□ -1.39
CD44-218ENST00000525469 MX2P20592 715 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 MSX1P28360 303 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 MAP2K3P46734 347 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 EIF6P56537 245 aaKnown RBP6.35□□□□□ -1.39
CD44-218ENST00000525469 FMR1Q06787 632 aaKnown RBP eCLIP6.35□□□□□ -1.39
CD44-218ENST00000525469 STYK1Q6J9G0 422 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 PRPF40BQ6NWY9 871 aaKnown RBP6.35□□□□□ -1.39
CD44-218ENST00000525469 INTS5Q6P9B9 1019 aaKnown RBP6.35□□□□□ -1.39
CD44-218ENST00000525469 SAPCD2Q86UD0 394 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 LARGE2Q8N3Y3 721 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 TPCN2Q8NHX9 752 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 MASTLQ96GX5 879 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 UCN2Q96RP3 112 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 C1orf115Q9H7X2 142 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 ZNF408Q9H9D4 720 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 ZNF277Q9NRM2 450 aaPredicted RBP6.35□□□□□ -1.39
CD44-218ENST00000525469 ZNF358Q9NW07 568 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 COL11A2P13942 1736 aaPredicted RBP6.35□□□□□ -1.39
CD44-218ENST00000525469 TJP1Q07157 1748 aa6.35□□□□□ -1.39
CD44-218ENST00000525469 COL15A1P39059 1388 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 CARMIL3Q8ND23 1372 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 TONSLQ96HA7 1378 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 SOS1Q07889 1333 aaPredicted RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 ADAMTS7Q9UKP4 1686 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 ST20-MTHFSA0A0A6YYL1 179 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 M0R2N6 131 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 GPR25O00155 361 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 TCERG1O14776 1098 aaKnown RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 LORP23490 312 aaPredicted RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 TNNT2P45379 298 aaPredicted RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 MTHFSP49914 203 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 FXR1P51114 621 aaKnown RBP eCLIP6.34□□□□□ -1.39
CD44-218ENST00000525469 ST5P78524 1137 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 FKBP4Q02790 459 aaKnown RBP eCLIP6.34□□□□□ -1.39
CD44-218ENST00000525469 PKN2Q16513 984 aaKnown RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 PLEKHO1Q53GL0 409 aaPredicted RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 C1orf141Q5JVX7 400 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 TAF3Q5VWG9 929 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 CCDC102BQ68D86 513 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 USP50Q70EL3 339 aaPredicted RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 NLRP8Q86W28 1048 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 RTKN2Q8IZC4 609 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 OGFOD1Q8N543 542 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 PUS7Q96PZ0 661 aaKnown RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 PNNQ9H307 717 aaKnown RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 SAGE1Q9NXZ1 904 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 HDAC9Q9UKV0 1011 aa6.34□□□□□ -1.39
CD44-218ENST00000525469 ATXN7L1Q9ULK2 861 aaPredicted RBP6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms