RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 FAM8A1Q9UBU6 413 aa4.34□□□□□ -1.71
CD44-216ENST00000525293 PPM1HQ9ULR3 514 aa4.34□□□□□ -1.71
CD44-216ENST00000525293 SAMM50Q9Y512 469 aa4.34□□□□□ -1.71
CD44-216ENST00000525293 PCDHGC5Q9Y5F6 944 aa4.34□□□□□ -1.71
CD44-216ENST00000525293 WNT11O96014 354 aa4.33□□□□□ -1.72
CD44-216ENST00000525293 CELA3AP09093 270 aa4.33□□□□□ -1.72
CD44-216ENST00000525293 FOSL1P15407 271 aa4.33□□□□□ -1.72
CD44-216ENST00000525293 CPSF6Q16630 551 aaKnown RBP eCLIP4.33□□□□□ -1.72
CD44-216ENST00000525293 EAPPQ56P03 285 aaPredicted RBP4.33□□□□□ -1.72
CD44-216ENST00000525293 ZNF765Q7L2R6 523 aa4.33□□□□□ -1.72
CD44-216ENST00000525293 FRMD6Q96NE9 622 aa4.33□□□□□ -1.72
CD44-216ENST00000525293 DUSP9Q99956 384 aaKnown RBP4.33□□□□□ -1.72
CD44-216ENST00000525293 LRRC4CQ9HCJ2 640 aa4.33□□□□□ -1.72
CD44-216ENST00000525293 CSADQ9Y600 493 aa4.33□□□□□ -1.72
CD44-216ENST00000525293 PRPF40AO75400 957 aaKnown RBP4.32□□□□□ -1.72
CD44-216ENST00000525293 EIF4BP23588 611 aaKnown RBP4.32□□□□□ -1.72
CD44-216ENST00000525293 GNA15P30679 374 aa4.32□□□□□ -1.72
CD44-216ENST00000525293 GP2P55259 537 aaKnown RBP4.32□□□□□ -1.72
CD44-216ENST00000525293 CYP27A1Q02318 531 aa4.32□□□□□ -1.72
CD44-216ENST00000525293 CDK5R2Q13319 367 aa4.32□□□□□ -1.72
CD44-216ENST00000525293 ZC3H12AQ5D1E8 599 aaKnown RBP4.32□□□□□ -1.72
CD44-216ENST00000525293 RASIP1Q5U651 963 aa4.32□□□□□ -1.72
CD44-216ENST00000525293 LLGL2Q6P1M3 1020 aa4.32□□□□□ -1.72
CD44-216ENST00000525293 OGFOD3Q6PK18 319 aa4.32□□□□□ -1.72
CD44-216ENST00000525293 ANKRD24Q8TF21 1146 aa4.32□□□□□ -1.72
CD44-216ENST00000525293 SSU72Q9NP77 194 aaKnown RBP4.32□□□□□ -1.72
CD44-216ENST00000525293 CACNA2D2Q9NY47 1150 aa4.32□□□□□ -1.72
CD44-216ENST00000525293 TTF2Q9UNY4 1162 aaKnown RBP4.32□□□□□ -1.72
CD44-216ENST00000525293 OAS3Q9Y6K5 1087 aaKnown RBP4.32□□□□□ -1.72
CD44-216ENST00000525293 DCDC2CA8MYV0 355 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 TRIM37O94972 964 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 NEFMP07197 916 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 ERVK-24P63145 666 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 COL19A1Q14993 1142 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 LRRC14Q15048 493 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 MSMPQ1L6U9 139 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 CYP27C1Q4G0S4 372 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 PPM1JQ5JR12 505 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 PCNX4Q63HM2 1172 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 C12orf40Q86WS4 652 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 RNF214Q8ND24 703 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 ISL2Q96A47 359 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 PICK1Q9NRD5 415 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 ZC3H7BQ9UGR2 993 aaKnown RBP4.31□□□□□ -1.72
CD44-216ENST00000525293 PCOLCE2Q9UKZ9 415 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 PCDHA4Q9UN74 947 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 CYP8B1Q9UNU6 501 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 AK5Q9Y6K8 562 aa4.31□□□□□ -1.72
CD44-216ENST00000525293 FAM87AP0C7U9 286 aa4.3□□□□□ -1.72
CD44-216ENST00000525293 FGD1P98174 961 aa4.3□□□□□ -1.72
CD44-216ENST00000525293 DNAJC14Q6Y2X3 702 aaPredicted RBP4.3□□□□□ -1.72
CD44-216ENST00000525293 SV2BQ7L1I2 683 aa4.3□□□□□ -1.72
CD44-216ENST00000525293 NPAS4Q8IUM7 802 aa4.3□□□□□ -1.72
CD44-216ENST00000525293 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.3□□□□□ -1.72
CD44-216ENST00000525293 GZF1Q9H116 711 aaPredicted RBP4.3□□□□□ -1.72
CD44-216ENST00000525293 CCDC39Q9UFE4 941 aa4.3□□□□□ -1.72
CD44-216ENST00000525293 PARP2Q9UGN5 583 aa4.3□□□□□ -1.72
CD44-216ENST00000525293 ANGEL1Q9UNK9 670 aaKnown RBP4.3□□□□□ -1.72
CD44-216ENST00000525293 LEFTY1O75610 366 aa4.29□□□□□ -1.72
CD44-216ENST00000525293 IRAK1P51617 712 aa4.29□□□□□ -1.72
CD44-216ENST00000525293 PTPN11Q06124 597 aaPredicted RBP4.29□□□□□ -1.72
CD44-216ENST00000525293 CCDC85BQ15834 202 aaPredicted RBP4.29□□□□□ -1.72
CD44-216ENST00000525293 ELMO3Q96BJ8 720 aa4.29□□□□□ -1.72
CD44-216ENST00000525293 BSDC1Q9NW68 430 aaPredicted RBP4.29□□□□□ -1.72
CD44-216ENST00000525293 PRNPP04156 253 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 XPCQ01831 940 aaPredicted RBP4.28□□□□□ -1.72
CD44-216ENST00000525293 RING1Q06587 406 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 PSMD2Q13200 908 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 INPP5AQ14642 412 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 MAP3K11Q16584 847 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 MEI1Q5TIA1 1274 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 TTBK2Q6IQ55 1244 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 UBE3DQ7Z6J8 389 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 TOP6BLQ8N6T0 577 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 FAM161BQ96MY7 647 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 DUSP23Q9BVJ7 150 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 GOLGA2P5Q9HBQ8 144 aa4.28□□□□□ -1.72
CD44-216ENST00000525293 FANCGO15287 622 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 LMNB1P20700 586 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 NTF4P34130 210 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 CDK8P49336 464 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 DAB2P98082 770 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 TAGLNQ01995 201 aaKnown RBP4.27□□□□□ -1.73
CD44-216ENST00000525293 CCDC27Q2M243 656 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 ZBTB37Q5TC79 503 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 SCARA3Q6AZY7 606 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 LRFN4Q6PJG9 635 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.27□□□□□ -1.73
CD44-216ENST00000525293 NFXL1Q6ZNB6 911 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 CDC37L1Q7L3B6 337 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 VSIG10LQ86VR7 867 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 TP53INP2Q8IXH6 220 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 FAM181AQ8N9Y4 354 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 GAL3ST3Q96A11 431 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 PLPPR2Q96GM1 343 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 PCDHB5Q9Y5E4 795 aa4.27□□□□□ -1.73
CD44-216ENST00000525293 COL17A1Q9UMD9 1497 aaPredicted RBP4.26□□□□□ -1.73
CD44-216ENST00000525293 PRAMEF27A3QJZ7 478 aa4.26□□□□□ -1.73
CD44-216ENST00000525293 TAL1P17542 331 aaPredicted RBP4.26□□□□□ -1.73
CD44-216ENST00000525293 BNIP3Q12983 259 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms