RNA–Protein interactions for RNA: ENST00000524481.5

PTPRK-216, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 3,157 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-216ENST00000524481 SPC24Q8NBT2 197 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 ESR2Q92731 530 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 NSUN4Q96CB9 384 aaKnown RBP13.69□□□□□ -0.22
PTPRK-216ENST00000524481 ZNF512BQ96KM6 892 aaPredicted RBP13.69□□□□□ -0.22
PTPRK-216ENST00000524481 KRT23Q9C075 422 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 ZC3H12CQ9C0D7 883 aaKnown RBP13.69□□□□□ -0.22
PTPRK-216ENST00000524481 CARMIL3Q8ND23 1372 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 BIN1O00499 593 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 RXRBP28702 533 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 GUCY1A2P33402 732 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 RTN1Q16799 776 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 ZNF827Q17R98 1081 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 IQCA1Q86XH1 822 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 ZNF384Q8TF68 577 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 CLIC4Q9Y696 253 aa13.69□□□□□ -0.22
PTPRK-216ENST00000524481 NUP188Q5SRE5 1749 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 TNKSO95271 1327 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 SH2B2O14492 632 aaPredicted RBP13.68□□□□□ -0.22
PTPRK-216ENST00000524481 EIF6P56537 245 aaKnown RBP13.68□□□□□ -0.22
PTPRK-216ENST00000524481 SSRP1Q08945 709 aaKnown RBP13.68□□□□□ -0.22
PTPRK-216ENST00000524481 ZRSR1Q15695 479 aaKnown RBP13.68□□□□□ -0.22
PTPRK-216ENST00000524481 ZNF804AQ7Z570 1209 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 FBXO33Q7Z6M2 555 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 RBM17Q96I25 401 aaKnown RBP13.68□□□□□ -0.22
PTPRK-216ENST00000524481 PGBD1Q96JS3 809 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 ZNF830Q96NB3 372 aaPredicted RBP13.68□□□□□ -0.22
PTPRK-216ENST00000524481 GNAT2P19087 354 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 RESTQ13127 1097 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 CCDC73Q6ZRK6 1079 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 IGDCC4Q8TDY8 1250 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 VAT1LQ9HCJ6 419 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 RFX7Q2KHR2 1363 aa13.68□□□□□ -0.22
PTPRK-216ENST00000524481 ZNF445P59923 1031 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 DRC7Q8IY82 874 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 TRIM22Q8IYM9 498 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 FSIP1Q8NA03 581 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 SH3RF3Q8TEJ3 882 aaPredicted RBP13.67□□□□□ -0.22
PTPRK-216ENST00000524481 RNF41Q9H4P4 317 aaPredicted RBP13.67□□□□□ -0.22
PTPRK-216ENST00000524481 DBNDD1Q9H9R9 158 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 V9GY48 417 aaPredicted RBP13.67□□□□□ -0.22
PTPRK-216ENST00000524481 KRT40Q6A162 431 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 SAMD1Q6SPF0 538 aaPredicted RBP13.67□□□□□ -0.22
PTPRK-216ENST00000524481 ZNF396Q96N95 335 aaPredicted RBP13.67□□□□□ -0.22
PTPRK-216ENST00000524481 ZSCAN16Q9H4T2 348 aaPredicted RBP13.67□□□□□ -0.22
PTPRK-216ENST00000524481 CNNM2Q9H8M5 875 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 LY9Q9HBG7 655 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 PARP3Q9Y6F1 533 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 RBM6P78332 1123 aaKnown RBP13.67□□□□□ -0.22
PTPRK-216ENST00000524481 SASS6Q6UVJ0 657 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 LLPHQ9BRT6 129 aaKnown RBP13.67□□□□□ -0.22
PTPRK-216ENST00000524481 POLLQ9UGP5 575 aa13.67□□□□□ -0.22
PTPRK-216ENST00000524481 XDHP47989 1333 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 BTBD18B2RXH4 712 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 SLURP2P0DP57 97 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 CHRNA5P30532 468 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 CTR9Q6PD62 1173 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 FBXO18Q8NFZ0 1043 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 SMARCC2Q8TAQ2 1214 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 CPVLQ9H3G5 476 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 CD209Q9NNX6 404 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 KIF28PB7ZC32 967 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 TFAP4Q01664 338 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 MAP3K11Q16584 847 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 ZNF654Q8IZM8 581 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 TMEM87BQ96K49 555 aa13.66□□□□□ -0.22
PTPRK-216ENST00000524481 RIOK1Q9BRS2 568 aaKnown RBP13.66□□□□□ -0.22
PTPRK-216ENST00000524481 PDGFDQ9GZP0 370 aaPredicted RBP13.66□□□□□ -0.22
PTPRK-216ENST00000524481 KINO60870 393 aaKnown RBP13.65□□□□□ -0.22
PTPRK-216ENST00000524481 ZNF444Q8N0Y2 327 aaPredicted RBP13.65□□□□□ -0.22
PTPRK-216ENST00000524481 PDILTQ8N807 584 aa13.65□□□□□ -0.22
PTPRK-216ENST00000524481 DCP1AQ9NPI6 582 aaPredicted RBP13.65□□□□□ -0.22
PTPRK-216ENST00000524481 RRAGDQ9NQL2 400 aaPredicted RBP13.65□□□□□ -0.22
PTPRK-216ENST00000524481 VPS54Q9P1Q0 977 aa13.65□□□□□ -0.22
PTPRK-216ENST00000524481 CACNB3P54284 484 aa13.65□□□□□ -0.22
PTPRK-216ENST00000524481 NR5A1Q13285 461 aa13.65□□□□□ -0.22
PTPRK-216ENST00000524481 SAFBQ15424 915 aaKnown RBP eCLIP13.65□□□□□ -0.22
PTPRK-216ENST00000524481 LUZP1Q86V48 1076 aa13.65□□□□□ -0.22
PTPRK-216ENST00000524481 AMOTL1Q8IY63 956 aa13.65□□□□□ -0.22
PTPRK-216ENST00000524481 ALDH8A1Q9H2A2 487 aaPredicted RBP13.65□□□□□ -0.22
PTPRK-216ENST00000524481 TUBGCP6Q96RT7 1819 aa13.65□□□□□ -0.22
PTPRK-216ENST00000524481 USP17L3A6NCW0 530 aa13.65□□□□□ -0.23
PTPRK-216ENST00000524481 USP17L4A6NCW7 530 aa13.65□□□□□ -0.23
PTPRK-216ENST00000524481 CDKL5O76039 1030 aa13.65□□□□□ -0.23
PTPRK-216ENST00000524481 GOLGA8HP0CJ92 632 aa13.65□□□□□ -0.23
PTPRK-216ENST00000524481 TCP10Q12799 353 aa13.65□□□□□ -0.23
PTPRK-216ENST00000524481 USP17L1Q7RTZ2 530 aa13.65□□□□□ -0.23
PTPRK-216ENST00000524481 CATIPQ7Z7H3 387 aa13.65□□□□□ -0.23
PTPRK-216ENST00000524481 ZSCAN29Q8IWY8 852 aaPredicted RBP13.65□□□□□ -0.23
PTPRK-216ENST00000524481 KCNQ5Q9NR82 932 aa13.65□□□□□ -0.23
PTPRK-216ENST00000524481 COL4A1P02462 1669 aa13.65□□□□□ -0.23
PTPRK-216ENST00000524481 BAG3O95817 575 aa13.64□□□□□ -0.23
PTPRK-216ENST00000524481 DPP8Q6V1X1 898 aaPredicted RBP13.64□□□□□ -0.23
PTPRK-216ENST00000524481 DEFB132Q7Z7B7 95 aa13.64□□□□□ -0.23
PTPRK-216ENST00000524481 HOMER1Q86YM7 354 aa13.64□□□□□ -0.23
PTPRK-216ENST00000524481 KIAA0825Q8IV33 1275 aa13.64□□□□□ -0.23
PTPRK-216ENST00000524481 TEX11Q8IYF3 940 aa13.64□□□□□ -0.23
PTPRK-216ENST00000524481 FANCBQ8NB91 859 aa13.64□□□□□ -0.23
PTPRK-216ENST00000524481 PAPPAQ13219 1627 aa13.64□□□□□ -0.23
PTPRK-216ENST00000524481 SLC3A2P08195 630 aaKnown RBP13.64□□□□□ -0.23
PTPRK-216ENST00000524481 MSNP26038 577 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms