RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 HLA-DOAP06340 250 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 NEFHP12036 1026 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 GNAQP50148 359 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 GTF2A1P52655 376 aaPredicted RBP13.26□□□□□ -0.29
SYNPO-204ENST00000519664 CHMP4BP1P59074 171 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 MYRIPQ8NFW9 859 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 BLZF1Q9H2G9 400 aa13.26□□□□□ -0.29
SYNPO-204ENST00000519664 CTAGE15A4D2H0 777 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 KIAA0754O94854 1291 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 CTAGE8P0CG41 777 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 CALML3P27482 149 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 MTX1Q13505 466 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 FAM98CQ17RN3 349 aaKnown RBP13.25□□□□□ -0.29
SYNPO-204ENST00000519664 AKNAD1Q5T1N1 836 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 CTAGE6Q86UF2 777 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 CTAGE4Q8IX94 777 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 OSBP2Q969R2 916 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 AIFM3Q96NN9 605 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 FAM107BQ9H098 131 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.25□□□□□ -0.29
SYNPO-204ENST00000519664 TSPOAP1O95153 1857 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 CTSWP56202 376 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 SPAG1Q07617 926 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 POLA2Q14181 598 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 NECTIN1Q15223 517 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 ADALQ6DHV7 355 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 SYNE4Q8N205 404 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 CARD6Q9BX69 1037 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 ZBTB1Q9Y2K1 713 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 FAM170AA1A519 330 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 ADKP55263 362 aaKnown RBP13.25□□□□□ -0.29
SYNPO-204ENST00000519664 CUL5Q93034 780 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 ADCY10Q96PN6 1610 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 CHGBP05060 677 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 IFNL3Q8IZI9 196 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 ZNF274Q96GC6 653 aaPredicted RBP13.25□□□□□ -0.29
SYNPO-204ENST00000519664 GPCPD1Q9NPB8 672 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 SERTAD1Q9UHV2 236 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 CTNND2Q9UQB3 1225 aa13.25□□□□□ -0.29
SYNPO-204ENST00000519664 CALM1P0DP23 149 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 CALM2P0DP24 149 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 CALM3P0DP25 149 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 MAP9Q49MG5 647 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 FBXO18Q8NFZ0 1043 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 CCDC87Q9NVE4 849 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 MAST3O60307 1309 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 CDK12Q9NYV4 1490 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-204ENST00000519664 CLASP1Q7Z460 1538 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 RTL9Q8NET4 1388 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 ERVV-2B6SEH9 535 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 EVCP57679 992 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 GSTO1P78417 241 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 CCDC42Q96M95 316 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 GOPCQ9HD26 462 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 C6orf50Q9HD87 102 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 LUC7L2Q9Y383 392 aaKnown RBP13.24□□□□□ -0.29
SYNPO-204ENST00000519664 TET3O43151 1660 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 COBLO75128 1261 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 GABPB1Q06547 395 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-204ENST00000519664 PAXIP1Q6ZW49 1069 aaPredicted RBP13.24□□□□□ -0.29
SYNPO-204ENST00000519664 VPS36Q86VN1 386 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 BCL2L12Q9HB09 334 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 MRVI1Q9Y6F6 885 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 ADCY9O60503 1353 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 PLEKHG1Q9ULL1 1385 aa13.24□□□□□ -0.29
SYNPO-204ENST00000519664 CTAGE9A4FU28 777 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 CTR9Q6PD62 1173 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 TEX11Q8IYF3 940 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 ZBTB38Q8NAP3 1195 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-204ENST00000519664 IPO4Q8TEX9 1081 aaKnown RBP13.23□□□□□ -0.29
SYNPO-204ENST00000519664 PUS7LQ9H0K6 701 aaKnown RBP13.23□□□□□ -0.29
SYNPO-204ENST00000519664 SEC31BQ9NQW1 1179 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 ZNF500O60304 480 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-204ENST00000519664 ZNF654Q8IZM8 581 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 SYCP3Q8IZU3 236 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 NSUN7Q8NE18 718 aaKnown RBP13.23□□□□□ -0.29
SYNPO-204ENST00000519664 PYM1Q9BRP8 204 aaKnown RBP13.23□□□□□ -0.29
SYNPO-204ENST00000519664 DENND2AQ9ULE3 1009 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 AKR1B15C9JRZ8 316 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-204ENST00000519664 CYP27B1O15528 508 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 CUTAO60888 179 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 CYLC1P35663 651 aaPredicted RBP13.23□□□□□ -0.29
SYNPO-204ENST00000519664 NLRP12P59046 1061 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 ST5P78524 1137 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 MAPKAPK5Q8IW41 473 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 CDC42BPBQ9Y5S2 1711 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 TXKP42681 527 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 PPARDQ03181 441 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 RAD51AP2Q09MP3 1159 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 POSTNQ15063 836 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 TTC38Q5R3I4 469 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 ZMYM1Q5SVZ6 1142 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 ZNF804AQ7Z570 1209 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 FAM114A1Q8IWE2 563 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 GPATCH11Q8N954 259 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 ALS2CR12Q96Q35 445 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 TMEM94Q12767 1356 aa13.23□□□□□ -0.29
SYNPO-204ENST00000519664 M0R2C6 588 aa13.22□□□□□ -0.29
SYNPO-204ENST00000519664 SF3B2Q13435 895 aaKnown RBP13.22□□□□□ -0.29
SYNPO-204ENST00000519664 WDR78Q5VTH9 848 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms