RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 GJB2P29033 226 aa8.66□□□□□ -1.02
CLIP1-205ENST00000514271 GPR162Q16538 588 aa8.66□□□□□ -1.02
CLIP1-205ENST00000514271 ARMCX5Q6P1M9 558 aa8.66□□□□□ -1.02
CLIP1-205ENST00000514271 C11orf57Q6ZUT1 292 aaPredicted RBP8.66□□□□□ -1.02
CLIP1-205ENST00000514271 TMTC2Q8N394 836 aa8.66□□□□□ -1.02
CLIP1-205ENST00000514271 MPHOSPH8Q99549 860 aa8.66□□□□□ -1.02
CLIP1-205ENST00000514271 TAOK3Q9H2K8 898 aa8.66□□□□□ -1.02
CLIP1-205ENST00000514271 PHLPP2Q6ZVD8 1323 aa8.65□□□□□ -1.02
CLIP1-205ENST00000514271 NR1I2O75469 434 aa8.65□□□□□ -1.02
CLIP1-205ENST00000514271 SASH3O75995 380 aa8.65□□□□□ -1.02
CLIP1-205ENST00000514271 LMNB1P20700 586 aa8.65□□□□□ -1.02
CLIP1-205ENST00000514271 EXOSC10Q01780 885 aaKnown RBP8.65□□□□□ -1.02
CLIP1-205ENST00000514271 SMIM5Q71RC9 77 aa8.65□□□□□ -1.02
CLIP1-205ENST00000514271 RHPN1Q8TCX5 695 aa8.65□□□□□ -1.02
CLIP1-205ENST00000514271 WDR90Q96KV7 1748 aa8.65□□□□□ -1.02
CLIP1-205ENST00000514271 NEMFO60524 1076 aa8.65□□□□□ -1.03
CLIP1-205ENST00000514271 IL15P40933 162 aaPredicted RBP8.65□□□□□ -1.03
CLIP1-205ENST00000514271 RFX5P48382 616 aaPredicted RBP8.65□□□□□ -1.03
CLIP1-205ENST00000514271 FKBP1AP62942 108 aaKnown RBP8.65□□□□□ -1.03
CLIP1-205ENST00000514271 UBE4AQ14139 1066 aa8.65□□□□□ -1.03
CLIP1-205ENST00000514271 LUZP1Q86V48 1076 aa8.65□□□□□ -1.03
CLIP1-205ENST00000514271 FMR1NBQ8N0W7 255 aaPredicted RBP8.65□□□□□ -1.03
CLIP1-205ENST00000514271 SUCLG2Q96I99 432 aa8.65□□□□□ -1.03
CLIP1-205ENST00000514271 IMPACTQ9P2X3 320 aa8.65□□□□□ -1.03
CLIP1-205ENST00000514271 PDS5AQ29RF7 1337 aaKnown RBP8.65□□□□□ -1.03
CLIP1-205ENST00000514271 SCN4AP35499 1836 aa8.65□□□□□ -1.03
CLIP1-205ENST00000514271 ITGA6P23229 1130 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 CASC1Q6TDU7 716 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 EXOC8Q8IYI6 725 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 MPNDQ8N594 471 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 NLGN2Q8NFZ4 835 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 EXOC6BQ9Y2D4 811 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 AKAP2Q9Y2D5 859 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 MYH8P13535 1937 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 A0A0G2JLW4 131 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 USP5P45974 858 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 IFNLR1Q8IU57 520 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-205ENST00000514271 ANP32BQ92688 251 aaKnown RBP8.64□□□□□ -1.03
CLIP1-205ENST00000514271 DDX19AQ9NUU7 478 aaKnown RBP8.64□□□□□ -1.03
CLIP1-205ENST00000514271 BCS1LQ9Y276 419 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 MAST2Q6P0Q8 1798 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 CDK5RAP2Q96SN8 1893 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 TBC1D8O95759 1140 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 GTF3C6Q969F1 213 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 FEZ2Q9UHY8 353 aaPredicted RBP8.64□□□□□ -1.03
CLIP1-205ENST00000514271 GGA1Q9UJY5 639 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 RBBP6Q7Z6E9 1792 aaKnown RBP8.64□□□□□ -1.03
CLIP1-205ENST00000514271 MYO3BQ8WXR4 1341 aa8.64□□□□□ -1.03
CLIP1-205ENST00000514271 SLC27A2O14975 620 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 SEMA3EO15041 775 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 TADA3O75528 432 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 SASH1O94885 1247 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 TUBB4AP04350 444 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 IFIT2P09913 472 aaKnown RBP8.63□□□□□ -1.03
CLIP1-205ENST00000514271 RPS6KB1P23443 525 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 ARID5BQ14865 1188 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 LMBR1LQ6UX01 489 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 CHRDL2Q6WN34 429 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 APTXQ7Z2E3 356 aaKnown RBP8.63□□□□□ -1.03
CLIP1-205ENST00000514271 UPF3BQ9BZI7 483 aaKnown RBP8.63□□□□□ -1.03
CLIP1-205ENST00000514271 INTS13Q9NVM9 706 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 ZNF215Q9UL58 517 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-205ENST00000514271 EP400Q96L91 3159 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 CPP00450 1065 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 CCDC192P0DO97 292 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 CHRNA5P30532 468 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 DPP8Q6V1X1 898 aaPredicted RBP8.63□□□□□ -1.03
CLIP1-205ENST00000514271 BICC1Q9H694 974 aaKnown RBP8.63□□□□□ -1.03
CLIP1-205ENST00000514271 YY1AP1Q9H869 796 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 ST7Q9NRC1 585 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 HPSEQ9Y251 543 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 LRRFIP2Q9Y608 721 aaKnown RBP8.63□□□□□ -1.03
CLIP1-205ENST00000514271 EYA2O00167 538 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 ATL3Q6DD88 541 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 CCDC186Q7Z3E2 898 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 CCDC88AQ3V6T2 1871 aa8.63□□□□□ -1.03
CLIP1-205ENST00000514271 NBPF7P0C2Y1 421 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-205ENST00000514271 ANO6Q4KMQ2 910 aa8.62□□□□□ -1.03
CLIP1-205ENST00000514271 TUBE1Q9UJT0 475 aa8.62□□□□□ -1.03
CLIP1-205ENST00000514271 SPDYE4A6NLX3 237 aa8.62□□□□□ -1.03
CLIP1-205ENST00000514271 PNMA6AP0CW24 399 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-205ENST00000514271 RPS12P25398 132 aaKnown RBP8.62□□□□□ -1.03
CLIP1-205ENST00000514271 IARSP41252 1262 aaKnown RBP8.62□□□□□ -1.03
CLIP1-205ENST00000514271 MDM2Q00987 491 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-205ENST00000514271 FOXD4L6Q3SYB3 417 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-205ENST00000514271 CREB3L3Q68CJ9 461 aa8.62□□□□□ -1.03
CLIP1-205ENST00000514271 FOXD4L3Q6VB84 417 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-205ENST00000514271 GREM2Q9H772 168 aa8.62□□□□□ -1.03
CLIP1-205ENST00000514271 ORC3Q9UBD5 711 aaPredicted RBP8.62□□□□□ -1.03
CLIP1-205ENST00000514271 FOCADQ5VW36 1801 aa8.62□□□□□ -1.03
CLIP1-205ENST00000514271 NT5DC1Q5TFE4 455 aa8.61□□□□□ -1.03
CLIP1-205ENST00000514271 NAA16Q6N069 864 aaPredicted RBP8.61□□□□□ -1.03
CLIP1-205ENST00000514271 KRT222Q8N1A0 295 aa8.61□□□□□ -1.03
CLIP1-205ENST00000514271 PPP1R13BQ96KQ4 1090 aa8.61□□□□□ -1.03
CLIP1-205ENST00000514271 COA1Q9GZY4 146 aa8.61□□□□□ -1.03
CLIP1-205ENST00000514271 CNNM1Q9NRU3 951 aa8.61□□□□□ -1.03
CLIP1-205ENST00000514271 RAB21Q9UL25 225 aa8.61□□□□□ -1.03
CLIP1-205ENST00000514271 SUGT1Q9Y2Z0 365 aa8.61□□□□□ -1.03
CLIP1-205ENST00000514271 RIPOR2Q9Y4F9 1068 aa8.61□□□□□ -1.03
CLIP1-205ENST00000514271 CLCN6P51797 869 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms