RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 DHX58Q96C10 678 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 TXLNGQ9NUQ3 528 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 ASIC3Q9UHC3 531 aa12.48□□□□□ -0.41
LIMCH1-217ENST00000512946 PSDA5PKW4 1024 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 CHMP2AO43633 222 aa12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 CTNNA1P35221 906 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 IRX1P78414 480 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 SPDL1Q96EA4 605 aa12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 ETF1P62495 437 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 CNNM4Q6P4Q7 775 aa12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 PAWRQ96IZ0 340 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 ZKSCAN3Q9BRR0 538 aa12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 CNOT10Q9H9A5 744 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 PPANQ9NQ55 473 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 POTEB3A0JP26 581 aa12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 TRIM27P14373 513 aa12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 POTEBQ6S5H4 581 aa12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 FGFR1OP2Q9NVK5 253 aa12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 DBF4Q9UBU7 674 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 DDX41Q9UJV9 622 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 STX10O60499 249 aa12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 UAP1Q16222 522 aaPredicted RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 NOC4LQ9BVI4 516 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 NOP53Q9NZM5 478 aaKnown RBP12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 MYO1AQ9UBC5 1043 aa12.47□□□□□ -0.41
LIMCH1-217ENST00000512946 TTC41PQ6P2S7 1318 aa12.46□□□□□ -0.41
LIMCH1-217ENST00000512946 TSPY2A6NKD2 308 aa12.46□□□□□ -0.41
LIMCH1-217ENST00000512946 EPB41P11171 864 aaKnown RBP12.46□□□□□ -0.41
LIMCH1-217ENST00000512946 ANGPTL3Q9Y5C1 460 aa12.46□□□□□ -0.41
LIMCH1-217ENST00000512946 TMEM110-MUSTN1A8MSY1 372 aa12.46□□□□□ -0.41
LIMCH1-217ENST00000512946 ASIC2Q16515 512 aa12.46□□□□□ -0.41
LIMCH1-217ENST00000512946 ARMC2Q8NEN0 867 aa12.46□□□□□ -0.41
LIMCH1-217ENST00000512946 RRP36Q96EU6 259 aaKnown RBP12.46□□□□□ -0.41
LIMCH1-217ENST00000512946 ZRANB1Q9UGI0 708 aa12.46□□□□□ -0.41
LIMCH1-217ENST00000512946 NSD2O96028 1365 aa12.46□□□□□ -0.41
LIMCH1-217ENST00000512946 SYF2O95926 243 aaKnown RBP12.46□□□□□ -0.42
LIMCH1-217ENST00000512946 GNA11P29992 359 aa12.46□□□□□ -0.42
LIMCH1-217ENST00000512946 WWC3Q9ULE0 1092 aa12.46□□□□□ -0.42
LIMCH1-217ENST00000512946 AMOTL2Q9Y2J4 779 aa12.46□□□□□ -0.42
LIMCH1-217ENST00000512946 HYOU1Q9Y4L1 999 aa12.46□□□□□ -0.42
LIMCH1-217ENST00000512946 BAG2O95816 211 aa12.46□□□□□ -0.42
LIMCH1-217ENST00000512946 SDSP20132 328 aa12.46□□□□□ -0.42
LIMCH1-217ENST00000512946 TTC19Q6DKK2 380 aaPredicted RBP12.46□□□□□ -0.42
LIMCH1-217ENST00000512946 TSC1Q92574 1164 aa12.46□□□□□ -0.42
LIMCH1-217ENST00000512946 HAUS4Q9H6D7 363 aa12.46□□□□□ -0.42
LIMCH1-217ENST00000512946 SART1O43290 800 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 N4BP2L2Q92802 583 aaPredicted RBP12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 ABTB1Q969K4 478 aaPredicted RBP12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 SPZ1Q9BXG8 430 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 MIS12Q9H081 205 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 RBM8AQ9Y5S9 174 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 MAP3K7O43318 606 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 PPM1FP49593 454 aaPredicted RBP12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 DTHD1Q6ZMT9 781 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 PACSIN2Q9UNF0 486 aaPredicted RBP12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 A0A1B0GW55 424 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 B4DLN1 442 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 DUX4L2P0CJ85 424 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 DUX4L3P0CJ86 424 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 DUX4L4P0CJ87 422 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 DUX4L5P0CJ88 424 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 DUX4L6P0CJ89 424 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 DUX4L7P0CJ90 424 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 MRPL12P52815 198 aaKnown RBP12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 NLRP12P59046 1061 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 GSTO1P78417 241 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 TAF11Q15544 211 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 GRAMD4Q6IC98 578 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 DUX4Q9UBX2 424 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 AGTPBP1Q9UPW5 1226 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 KRT2P35908 639 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 IL9RQ01113 521 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 MCMDC2Q4G0Z9 681 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 FRMD4BQ9Y2L6 1034 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 DAAM1Q9Y4D1 1078 aa12.45□□□□□ -0.42
LIMCH1-217ENST00000512946 GNAT2P19087 354 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 ARID5AQ03989 594 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 OCA2Q04671 838 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 RPS6KA2Q15349 733 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 CRNKL1Q9BZJ0 848 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 PAIP2BQ9ULR5 123 aaKnown RBP12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 GUCY2CP25092 1073 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 PDE6BP35913 854 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 C8orf34Q49A92 452 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 SMARCA2P51531 1590 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 ABCC8Q09428 1581 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 CUTAO60888 179 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 HLA-DOAP06340 250 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 MX2P20592 715 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 NEK2P51955 445 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 PDE1AP54750 535 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 TMED1Q13445 227 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 RAPGEF1Q13905 1077 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 CABP5Q9NP86 173 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 RIC8AQ9NPQ8 531 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 LRRC9Q6ZRR7 1453 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 GFAPP14136 432 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 MYL6BP14649 208 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 VPS41P49754 854 aa12.44□□□□□ -0.42
LIMCH1-217ENST00000512946 POLE2P56282 527 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms