RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 RAI14Q9P0K7 980 aa22.04■■□□□ 1.12
TPM3-220ENST00000509601 COG6Q9Y2V7 657 aa22.04■■□□□ 1.12
TPM3-220ENST00000509601 PHF20L1A8MW92 1017 aa22.03■■□□□ 1.12
TPM3-220ENST00000509601 CYP2E1P05181 493 aaPredicted RBP22.03■■□□□ 1.12
TPM3-220ENST00000509601 SLURP2P0DP57 97 aa22.03■■□□□ 1.12
TPM3-220ENST00000509601 PPATQ06203 517 aa22.03■■□□□ 1.12
TPM3-220ENST00000509601 PPIL2Q13356 520 aa22.03■■□□□ 1.12
TPM3-220ENST00000509601 PKN2Q16513 984 aaKnown RBP22.03■■□□□ 1.12
TPM3-220ENST00000509601 FAM43AQ8N2R8 423 aa22.03■■□□□ 1.12
TPM3-220ENST00000509601 TLR7Q9NYK1 1049 aaKnown RBP22.03■■□□□ 1.12
TPM3-220ENST00000509601 GSTO1P78417 241 aa22.02■■□□□ 1.12
TPM3-220ENST00000509601 LRP2BPQ9P2M1 347 aa22.02■■□□□ 1.12
TPM3-220ENST00000509601 EXOC6BQ9Y2D4 811 aa22.02■■□□□ 1.12
TPM3-220ENST00000509601 NPM3O75607 178 aaKnown RBP22.01■■□□□ 1.11
TPM3-220ENST00000509601 NOL9Q5SY16 702 aaKnown RBP22.01■■□□□ 1.11
TPM3-220ENST00000509601 SIRT2Q8IXJ6 389 aa22.01■■□□□ 1.11
TPM3-220ENST00000509601 DDX19BQ9UMR2 479 aa22.01■■□□□ 1.11
TPM3-220ENST00000509601 HPS5Q9UPZ3 1129 aa22.01■■□□□ 1.11
TPM3-220ENST00000509601 MAP4K4O95819 1239 aaPredicted RBP22■■□□□ 1.11
TPM3-220ENST00000509601 CETPP11597 493 aa22■■□□□ 1.11
TPM3-220ENST00000509601 ZAP70P43403 619 aa22■■□□□ 1.11
TPM3-220ENST00000509601 SNAPC2Q13487 334 aa22■■□□□ 1.11
TPM3-220ENST00000509601 PICALMQ13492 652 aa22■■□□□ 1.11
TPM3-220ENST00000509601 RPAP2Q8IXW5 612 aaPredicted RBP22■■□□□ 1.11
TPM3-220ENST00000509601 BTBD19C9JJ37 291 aa21.99■■□□□ 1.11
TPM3-220ENST00000509601 CAP1Q01518 475 aa21.99■■□□□ 1.11
TPM3-220ENST00000509601 ZSCAN29Q8IWY8 852 aaPredicted RBP21.99■■□□□ 1.11
TPM3-220ENST00000509601 PIH1D3Q9NQM4 214 aaKnown RBP21.99■■□□□ 1.11
TPM3-220ENST00000509601 KCNH4Q9UQ05 1017 aa21.99■■□□□ 1.11
TPM3-220ENST00000509601 MOGSQ13724 837 aa21.98■■□□□ 1.11
TPM3-220ENST00000509601 TAF1CQ15572 869 aaPredicted RBP21.98■■□□□ 1.11
TPM3-220ENST00000509601 C20orf194Q5TEA3 1177 aa21.98■■□□□ 1.11
TPM3-220ENST00000509601 FBXO46Q6PJ61 603 aaPredicted RBP21.98■■□□□ 1.11
TPM3-220ENST00000509601 ZFYVE28Q9HCC9 887 aa21.98■■□□□ 1.11
TPM3-220ENST00000509601 TBC1D12O60347 775 aa21.97■■□□□ 1.11
TPM3-220ENST00000509601 PPP4CP60510 307 aa21.97■■□□□ 1.11
TPM3-220ENST00000509601 SP3Q02447 781 aa21.97■■□□□ 1.11
TPM3-220ENST00000509601 ADGRA1Q86SQ6 560 aa21.97■■□□□ 1.11
TPM3-220ENST00000509601 ERC1Q8IUD2 1116 aa21.97■■□□□ 1.11
TPM3-220ENST00000509601 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.97■■□□□ 1.11
TPM3-220ENST00000509601 RHPN1Q8TCX5 695 aa21.97■■□□□ 1.11
TPM3-220ENST00000509601 NAA16Q6N069 864 aaPredicted RBP21.96■■□□□ 1.11
TPM3-220ENST00000509601 OTOP1Q7RTM1 612 aa21.96■■□□□ 1.11
TPM3-220ENST00000509601 CD99L2Q8TCZ2 262 aa21.96■■□□□ 1.11
TPM3-220ENST00000509601 SH3RF3Q8TEJ3 882 aaPredicted RBP21.96■■□□□ 1.11
TPM3-220ENST00000509601 ERO1AQ96HE7 468 aa21.96■■□□□ 1.11
TPM3-220ENST00000509601 IL1RAPL2Q9NP60 686 aa21.96■■□□□ 1.11
TPM3-220ENST00000509601 ZCCHC17Q9NP64 241 aaKnown RBP21.96■■□□□ 1.11
TPM3-220ENST00000509601 TRIM17Q9Y577 477 aa21.96■■□□□ 1.11
TPM3-220ENST00000509601 IGSF3O75054 1194 aa21.95■■□□□ 1.1
TPM3-220ENST00000509601 PDE3AQ14432 1141 aa21.95■■□□□ 1.1
TPM3-220ENST00000509601 HSP90AB4PQ58FF6 505 aa21.95■■□□□ 1.1
TPM3-220ENST00000509601 AACSQ86V21 672 aa21.95■■□□□ 1.1
TPM3-220ENST00000509601 TEX11Q8IYF3 940 aa21.95■■□□□ 1.1
TPM3-220ENST00000509601 SCYL3Q8IZE3 742 aa21.95■■□□□ 1.1
TPM3-220ENST00000509601 OSBPL5Q9H0X9 879 aaPredicted RBP21.95■■□□□ 1.1
TPM3-220ENST00000509601 AATFQ9NY61 560 aaKnown RBP eCLIP21.95■■□□□ 1.1
TPM3-220ENST00000509601 CXCL11O14625 94 aa21.94■■□□□ 1.1
TPM3-220ENST00000509601 PTPRAP18433 802 aa21.94■■□□□ 1.1
TPM3-220ENST00000509601 NDUFB9Q9Y6M9 179 aa21.94■■□□□ 1.1
TPM3-220ENST00000509601 MYO5AQ9Y4I1 1855 aaKnown RBP21.94■■□□□ 1.1
TPM3-220ENST00000509601 TLR2O60603 784 aa21.93■■□□□ 1.1
TPM3-220ENST00000509601 CTNND1O60716 968 aaKnown RBP21.93■■□□□ 1.1
TPM3-220ENST00000509601 BAG3O95817 575 aa21.93■■□□□ 1.1
TPM3-220ENST00000509601 ANKRD23Q86SG2 305 aa21.93■■□□□ 1.1
TPM3-220ENST00000509601 ANTXR1Q9H6X2 564 aa21.93■■□□□ 1.1
TPM3-220ENST00000509601 AFG3L2Q9Y4W6 797 aa21.93■■□□□ 1.1
TPM3-220ENST00000509601 ZHX2Q9Y6X8 837 aa21.93■■□□□ 1.1
TPM3-220ENST00000509601 FAM196BA6NMK8 535 aa21.92■■□□□ 1.1
TPM3-220ENST00000509601 HMMRO75330 724 aa21.92■■□□□ 1.1
TPM3-220ENST00000509601 SOX10P56693 466 aa21.92■■□□□ 1.1
TPM3-220ENST00000509601 MLLT1Q03111 559 aaPredicted RBP21.92■■□□□ 1.1
TPM3-220ENST00000509601 GPAT2Q6NUI2 795 aa21.92■■□□□ 1.1
TPM3-220ENST00000509601 EFCC1Q9HA90 598 aa21.92■■□□□ 1.1
TPM3-220ENST00000509601 DOCK2Q92608 1830 aa21.92■■□□□ 1.1
TPM3-220ENST00000509601 RRP1BQ14684 758 aaKnown RBP21.91■■□□□ 1.1
TPM3-220ENST00000509601 KIF1BPQ96EK5 621 aa21.91■■□□□ 1.1
TPM3-220ENST00000509601 NOL10Q9BSC4 688 aaKnown RBP21.91■■□□□ 1.1
TPM3-220ENST00000509601 CHMP4BQ9H444 224 aaKnown RBP21.91■■□□□ 1.1
TPM3-220ENST00000509601 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.91■■□□□ 1.1
TPM3-220ENST00000509601 PICK1Q9NRD5 415 aa21.91■■□□□ 1.1
TPM3-220ENST00000509601 PTPN22Q9Y2R2 807 aa21.91■■□□□ 1.1
TPM3-220ENST00000509601 HTTP42858 3142 aa21.91■■□□□ 1.1
TPM3-220ENST00000509601 APBB1O00213 710 aa21.9■■□□□ 1.1
TPM3-220ENST00000509601 PDHXO00330 501 aa21.9■■□□□ 1.1
TPM3-220ENST00000509601 DYNLL1P63167 89 aaKnown RBP21.9■■□□□ 1.1
TPM3-220ENST00000509601 C17orf99Q6UX52 265 aa21.9■■□□□ 1.1
TPM3-220ENST00000509601 TGFBRAP1Q8WUH2 860 aa21.9■■□□□ 1.1
TPM3-220ENST00000509601 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.9■■□□□ 1.1
TPM3-220ENST00000509601 COL2A1P02458 1487 aaPredicted RBP21.9■■□□□ 1.1
TPM3-220ENST00000509601 RAB11FIP3O75154 756 aa21.89■■□□□ 1.09
TPM3-220ENST00000509601 IDH1O75874 414 aaKnown RBP21.89■■□□□ 1.09
TPM3-220ENST00000509601 PLCG2P16885 1265 aa21.89■■□□□ 1.09
TPM3-220ENST00000509601 CYP7A1P22680 504 aa21.89■■□□□ 1.09
TPM3-220ENST00000509601 MAPKAPK5Q8IW41 473 aa21.89■■□□□ 1.09
TPM3-220ENST00000509601 CLASRPQ8N2M8 674 aaKnown RBP21.89■■□□□ 1.09
TPM3-220ENST00000509601 A0A0G2JLL6 359 aaPredicted RBP21.88■■□□□ 1.09
TPM3-220ENST00000509601 PRRT2Q7Z6L0 340 aaPredicted RBP21.88■■□□□ 1.09
TPM3-220ENST00000509601 CCDC84Q86UT8 332 aaPredicted RBP21.88■■□□□ 1.09
TPM3-220ENST00000509601 MAGEB6Q8N7X4 407 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms