RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 KCNMA1Q12791 1236 aa5.93□□□□□ -1.46
USP53-204ENST00000507906 COL9A3Q14050 684 aaPredicted RBP5.93□□□□□ -1.46
USP53-204ENST00000507906 ILDR2Q71H61 639 aa5.93□□□□□ -1.46
USP53-204ENST00000507906 GALNT11Q8NCW6 608 aa5.93□□□□□ -1.46
USP53-204ENST00000507906 PLPPR2Q96GM1 343 aa5.93□□□□□ -1.46
USP53-204ENST00000507906 CRBNQ96SW2 442 aa5.93□□□□□ -1.46
USP53-204ENST00000507906 CCDC113Q9H0I3 377 aa5.93□□□□□ -1.46
USP53-204ENST00000507906 JPH1Q9HDC5 661 aaPredicted RBP5.93□□□□□ -1.46
USP53-204ENST00000507906 ACTR10Q9NZ32 417 aa5.93□□□□□ -1.46
USP53-204ENST00000507906 PCDHA4Q9UN74 947 aa5.93□□□□□ -1.46
USP53-204ENST00000507906 PPME1Q9Y570 386 aa5.93□□□□□ -1.46
USP53-204ENST00000507906 LOC100996750A0A140TA64 210 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 A0A1W2PQH9 124 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 FSCN2O14926 492 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 U2SURPO15042 1029 aaKnown RBP5.92□□□□□ -1.46
USP53-204ENST00000507906 DDX3YO15523 660 aaKnown RBP5.92□□□□□ -1.46
USP53-204ENST00000507906 HTR3BO95264 441 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 GJB6O95452 261 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 BPNT1O95861 308 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 ACRP10323 421 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 EPXP11678 715 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 HSD3B2P26439 372 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 CASP7P55210 303 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 AP3B2Q13367 1082 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 ZYXQ15942 572 aaKnown RBP5.92□□□□□ -1.46
USP53-204ENST00000507906 TNNI3KQ59H18 835 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 LARP1BQ659C4 914 aaKnown RBP5.92□□□□□ -1.46
USP53-204ENST00000507906 GPAT2Q6NUI2 795 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 LRP10Q7Z4F1 713 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 SH3TC2Q8TF17 1288 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 ACDQ96AP0 544 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 KRTAP4-6Q9BYQ5 205 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 SOX17Q9H6I2 414 aaPredicted RBP5.92□□□□□ -1.46
USP53-204ENST00000507906 PRR36Q9H6K5 1346 aa5.92□□□□□ -1.46
USP53-204ENST00000507906 UPK3BL1B0FP48 263 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 UPK3BL2E5RIL1 263 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 ENPP3O14638 875 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 DIAPH1O60610 1272 aaKnown RBP5.91□□□□□ -1.46
USP53-204ENST00000507906 ADAM11O75078 769 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 ADAMTS2O95450 1211 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 LIG1P18858 919 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 MAP2K3P46734 347 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 CABP4P57796 275 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 C19orf57Q0VDD7 668 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 SQSTM1Q13501 440 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 POU4F3Q15319 338 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 WIPI1Q5MNZ9 446 aaPredicted RBP5.91□□□□□ -1.46
USP53-204ENST00000507906 MRM1Q6IN84 353 aaKnown RBP5.91□□□□□ -1.46
USP53-204ENST00000507906 SLCO4C1Q6ZQN7 724 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 TTC6Q86TZ1 520 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 KCNK4Q9NYG8 393 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 MAPK8IP1Q9UQF2 711 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 R3HCC1Q9Y3T6 440 aaKnown RBP5.91□□□□□ -1.46
USP53-204ENST00000507906 LTBP3Q9NS15 1303 aa5.91□□□□□ -1.46
USP53-204ENST00000507906 ESYT3A0FGR9 886 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 DCDC2CA8MYV0 355 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 PDPK1O15530 556 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 PIP4K2BP78356 416 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 SETDB1Q15047 1291 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 PPP2R5EQ16537 467 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 SCARA3Q6AZY7 606 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 LYPD4Q6UWN0 246 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 C6orf15Q6UXA7 325 aaPredicted RBP5.9□□□□□ -1.46
USP53-204ENST00000507906 SPATC1Q76KD6 591 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 CYFIP1Q7L576 1253 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 C12orf40Q86WS4 652 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 OR6P1Q8NGX9 317 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 LEMD3Q9Y2U8 911 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 CSADQ9Y600 493 aa5.9□□□□□ -1.46
USP53-204ENST00000507906 SLC22A31A6NKX4 558 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 MEIS3P2A8K0S8 358 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 SHISA8B8ZZ34 492 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 M0R082 166 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 DEAF1O75398 565 aaPredicted RBP5.89□□□□□ -1.47
USP53-204ENST00000507906 IMPDH2P12268 514 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 ALAS2P22557 587 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 NLRP12P59046 1061 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 ZNF417Q8TAU3 575 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 ATG4CQ96DT6 458 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 ZNF587Q96SQ5 575 aaPredicted RBP5.89□□□□□ -1.47
USP53-204ENST00000507906 SLC9A7Q96T83 725 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 FANCLQ9NW38 375 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 REV1Q9UBZ9 1251 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 PFDN2Q9UHV9 154 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 PCDHGC5Q9Y5F6 944 aa5.89□□□□□ -1.47
USP53-204ENST00000507906 LOC100289279A0A1B0GTE1 492 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 CHURC1-FNTBB4DL54 471 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 RBAK-RBAKDNI3L0D1 243 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 RNF225M0QZC1 329 aaPredicted RBP5.88□□□□□ -1.47
USP53-204ENST00000507906 CYP11A1P05108 521 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 NCLP19338 710 aaKnown RBP5.88□□□□□ -1.47
USP53-204ENST00000507906 RING1Q06587 406 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 RASGRF1Q13972 1273 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 FXNQ16595 210 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 PLEKHG4Q58EX7 1191 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 ZC3H12AQ5D1E8 599 aaKnown RBP5.88□□□□□ -1.47
USP53-204ENST00000507906 MSL1Q68DK7 614 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 OVOS1Q6IE37 1185 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 FAM178BQ8IXR5 827 aa5.88□□□□□ -1.47
USP53-204ENST00000507906 GOLGA6L1Q8N7Z2 621 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms