RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 ZHX2Q9Y6X8 837 aa26■■□□□ 1.75
SQSTM1-210ENST00000506042 GAKO14976 1311 aa25.99■■□□□ 1.75
SQSTM1-210ENST00000506042 CTNND1O60716 968 aaKnown RBP25.99■■□□□ 1.75
SQSTM1-210ENST00000506042 SLAIN1Q8ND83 568 aa25.99■■□□□ 1.75
SQSTM1-210ENST00000506042 PNMA3Q9UL41 463 aa25.99■■□□□ 1.75
SQSTM1-210ENST00000506042 SRGAP3O43295 1099 aa25.98■■□□□ 1.75
SQSTM1-210ENST00000506042 OSBPP22059 807 aa25.98■■□□□ 1.75
SQSTM1-210ENST00000506042 GADL1Q6ZQY3 521 aa25.98■■□□□ 1.75
SQSTM1-210ENST00000506042 FAM163AQ96GL9 167 aaPredicted RBP25.98■■□□□ 1.75
SQSTM1-210ENST00000506042 TBC1D2Q9BYX2 928 aa25.98■■□□□ 1.75
SQSTM1-210ENST00000506042 MROH7-TTC4A0A0A0MT08 1334 aa25.96■■□□□ 1.75
SQSTM1-210ENST00000506042 A0A0G2JLL6 359 aaPredicted RBP25.96■■□□□ 1.75
SQSTM1-210ENST00000506042 A0A1B0GUL7 405 aa25.96■■□□□ 1.75
SQSTM1-210ENST00000506042 CAP1Q01518 475 aa25.96■■□□□ 1.75
SQSTM1-210ENST00000506042 PABPC4Q13310 644 aaKnown RBP eCLIP25.96■■□□□ 1.75
SQSTM1-210ENST00000506042 PRRT2Q7Z6L0 340 aaPredicted RBP25.96■■□□□ 1.75
SQSTM1-210ENST00000506042 CDCA7LQ96GN5 454 aa25.96■■□□□ 1.75
SQSTM1-210ENST00000506042 NEUROD6Q96NK8 337 aa25.96■■□□□ 1.75
SQSTM1-210ENST00000506042 PTPRAP18433 802 aa25.95■■□□□ 1.74
SQSTM1-210ENST00000506042 BTDP43251 543 aa25.95■■□□□ 1.74
SQSTM1-210ENST00000506042 PICALMQ13492 652 aa25.95■■□□□ 1.74
SQSTM1-210ENST00000506042 RASGRF1Q13972 1273 aa25.95■■□□□ 1.74
SQSTM1-210ENST00000506042 TRMT2AQ8IZ69 625 aaKnown RBP25.95■■□□□ 1.74
SQSTM1-210ENST00000506042 PA2G4Q9UQ80 394 aaKnown RBP25.95■■□□□ 1.74
SQSTM1-210ENST00000506042 NPM3O75607 178 aaKnown RBP25.94■■□□□ 1.74
SQSTM1-210ENST00000506042 ECM2O94769 699 aaPredicted RBP25.94■■□□□ 1.74
SQSTM1-210ENST00000506042 GJB1P08034 283 aa25.94■■□□□ 1.74
SQSTM1-210ENST00000506042 DPF3Q92784 378 aa25.94■■□□□ 1.74
SQSTM1-210ENST00000506042 MEIS3Q99687 375 aa25.94■■□□□ 1.74
SQSTM1-210ENST00000506042 RNF208Q9H0X6 261 aa25.94■■□□□ 1.74
SQSTM1-210ENST00000506042 ADGRA2Q96PE1 1338 aa25.93■■□□□ 1.74
SQSTM1-210ENST00000506042 TIMM10P62072 90 aa25.93■■□□□ 1.74
SQSTM1-210ENST00000506042 G3BP1Q13283 466 aaKnown RBP eCLIP25.93■■□□□ 1.74
SQSTM1-210ENST00000506042 COA7Q96BR5 231 aa25.93■■□□□ 1.74
SQSTM1-210ENST00000506042 XAGE2Q96GT9 111 aa25.93■■□□□ 1.74
SQSTM1-210ENST00000506042 NR2E3Q9Y5X4 410 aa25.93■■□□□ 1.74
SQSTM1-210ENST00000506042 DOCK1Q14185 1865 aa25.93■■□□□ 1.74
SQSTM1-210ENST00000506042 TNPO2O14787 897 aaKnown RBP25.92■■□□□ 1.74
SQSTM1-210ENST00000506042 BCRP11274 1271 aa25.92■■□□□ 1.74
SQSTM1-210ENST00000506042 MTX1Q13505 466 aa25.92■■□□□ 1.74
SQSTM1-210ENST00000506042 OSBPL5Q9H0X9 879 aaPredicted RBP25.92■■□□□ 1.74
SQSTM1-210ENST00000506042 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.92■■□□□ 1.74
SQSTM1-210ENST00000506042 AFG3L2Q9Y4W6 797 aa25.92■■□□□ 1.74
SQSTM1-210ENST00000506042 PHF20L1A8MW92 1017 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 TBC1D12O60347 775 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 GNAI2P04899 355 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 UQCRFS1P1P0C7P4 283 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 CYP2C8P10632 490 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 CCL5P13501 91 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 ADORA1P30542 326 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 GJA8P48165 433 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 MAP3K10Q02779 954 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 HTTP42858 3142 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 ZSWIM8A7E2V4 1837 aa25.91■■□□□ 1.74
SQSTM1-210ENST00000506042 GPR75-ASB3A0A0A6YYF3 556 aa25.9■■□□□ 1.74
SQSTM1-210ENST00000506042 PLCG2P16885 1265 aa25.9■■□□□ 1.74
SQSTM1-210ENST00000506042 RARSP54136 660 aaKnown RBP25.9■■□□□ 1.74
SQSTM1-210ENST00000506042 MECOMQ03112 1051 aa25.9■■□□□ 1.74
SQSTM1-210ENST00000506042 TFCP2Q12800 502 aa25.9■■□□□ 1.74
SQSTM1-210ENST00000506042 GPAT2Q6NUI2 795 aa25.9■■□□□ 1.74
SQSTM1-210ENST00000506042 AS3MTQ9HBK9 375 aa25.9■■□□□ 1.74
SQSTM1-210ENST00000506042 RAI14Q9P0K7 980 aa25.9■■□□□ 1.74
SQSTM1-210ENST00000506042 AGTPBP1Q9UPW5 1226 aa25.9■■□□□ 1.74
SQSTM1-210ENST00000506042 MGAMO43451 1857 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 TRIM75PA6NK02 468 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 BAG3O95817 575 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 PRKCZQ05513 592 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 MOGSQ13724 837 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 ZFPM1Q8IX07 1006 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 SPATA5Q8NB90 893 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 PROCA1Q8NCQ7 364 aaPredicted RBP25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 PXYLP1Q8TE99 480 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 TRIM34Q9BYJ4 488 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 LRP2BPQ9P2M1 347 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 ATRNL1Q5VV63 1379 aa25.89■■□□□ 1.74
SQSTM1-210ENST00000506042 COL2A1P02458 1487 aaPredicted RBP25.89■■□□□ 1.73
SQSTM1-210ENST00000506042 RFX7Q2KHR2 1363 aa25.88■■□□□ 1.73
SQSTM1-210ENST00000506042 ADCY3O60266 1144 aa25.88■■□□□ 1.73
SQSTM1-210ENST00000506042 IGSF3O75054 1194 aa25.88■■□□□ 1.73
SQSTM1-210ENST00000506042 GCLCP48506 637 aaPredicted RBP25.88■■□□□ 1.73
SQSTM1-210ENST00000506042 MTFR1Q15390 333 aa25.88■■□□□ 1.73
SQSTM1-210ENST00000506042 HERC5Q9UII4 1024 aaKnown RBP25.88■■□□□ 1.73
SQSTM1-210ENST00000506042 CCER2I3L3R5 266 aa25.87■■□□□ 1.73
SQSTM1-210ENST00000506042 DDTLA6NHG4 134 aaPredicted RBP25.86■■□□□ 1.73
SQSTM1-210ENST00000506042 H0YGN5 161 aa25.86■■□□□ 1.73
SQSTM1-210ENST00000506042 OS9Q13438 667 aaPredicted RBP25.86■■□□□ 1.73
SQSTM1-210ENST00000506042 IRF5Q13568 498 aa25.86■■□□□ 1.73
SQSTM1-210ENST00000506042 DHX36Q9H2U1 1008 aaKnown RBP25.86■■□□□ 1.73
SQSTM1-210ENST00000506042 COLQQ9Y215 455 aaPredicted RBP25.86■■□□□ 1.73
SQSTM1-210ENST00000506042 CCDC158Q5M9N0 1113 aa25.85■■□□□ 1.73
SQSTM1-210ENST00000506042 FARP2O94887 1054 aaPredicted RBP25.84■■□□□ 1.73
SQSTM1-210ENST00000506042 ARID4AP29374 1257 aaPredicted RBP25.84■■□□□ 1.73
SQSTM1-210ENST00000506042 FLT3LGP49771 235 aa25.84■■□□□ 1.73
SQSTM1-210ENST00000506042 FAM110CQ1W6H9 321 aa25.84■■□□□ 1.73
SQSTM1-210ENST00000506042 TEX11Q8IYF3 940 aa25.84■■□□□ 1.73
SQSTM1-210ENST00000506042 ZNF280CQ8ND82 737 aa25.84■■□□□ 1.73
SQSTM1-210ENST00000506042 U2AF1L4Q8WU68 220 aaKnown RBP25.84■■□□□ 1.73
SQSTM1-210ENST00000506042 FRAT1Q92837 279 aaPredicted RBP25.84■■□□□ 1.73
SQSTM1-210ENST00000506042 HMG20BQ9P0W2 317 aa25.84■■□□□ 1.73
SQSTM1-210ENST00000506042 TAOK2Q9UL54 1235 aa25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms