RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 ZNF112Q9UJU3 913 aa19.27■□□□□ 0.68
HDAC4-213ENST00000496347 FKTNO75072 461 aa19.26■□□□□ 0.67
HDAC4-213ENST00000496347 RHBDL3P58872 404 aa19.26■□□□□ 0.67
HDAC4-213ENST00000496347 PDE3AQ14432 1141 aa19.26■□□□□ 0.67
HDAC4-213ENST00000496347 NOL9Q5SY16 702 aaKnown RBP19.26■□□□□ 0.67
HDAC4-213ENST00000496347 TBC1D9Q6ZT07 1266 aa19.26■□□□□ 0.67
HDAC4-213ENST00000496347 RPAP2Q8IXW5 612 aaPredicted RBP19.26■□□□□ 0.67
HDAC4-213ENST00000496347 ZKSCAN4Q969J2 545 aaPredicted RBP19.26■□□□□ 0.67
HDAC4-213ENST00000496347 ZCCHC17Q9NP64 241 aaKnown RBP19.26■□□□□ 0.67
HDAC4-213ENST00000496347 EXOC6BQ9Y2D4 811 aa19.26■□□□□ 0.67
HDAC4-213ENST00000496347 CCL15-CCL14A0A0B4J2E2 113 aa19.25■□□□□ 0.67
HDAC4-213ENST00000496347 PPATQ06203 517 aa19.25■□□□□ 0.67
HDAC4-213ENST00000496347 CRHR2Q13324 411 aa19.25■□□□□ 0.67
HDAC4-213ENST00000496347 SNAPC2Q13487 334 aa19.25■□□□□ 0.67
HDAC4-213ENST00000496347 CCL15Q16663 113 aa19.25■□□□□ 0.67
HDAC4-213ENST00000496347 BRI3BPQ8WY22 251 aa19.25■□□□□ 0.67
HDAC4-213ENST00000496347 EAF2Q96CJ1 260 aaPredicted RBP19.25■□□□□ 0.67
HDAC4-213ENST00000496347 PTPN18Q99952 460 aa19.25■□□□□ 0.67
HDAC4-213ENST00000496347 TLR7Q9NYK1 1049 aaKnown RBP19.25■□□□□ 0.67
HDAC4-213ENST00000496347 PTPRFP10586 1907 aa19.25■□□□□ 0.67
HDAC4-213ENST00000496347 CENPFP49454 3210 aa19.24■□□□□ 0.67
HDAC4-213ENST00000496347 CETPP11597 493 aa19.24■□□□□ 0.67
HDAC4-213ENST00000496347 INPP5BP32019 993 aa19.24■□□□□ 0.67
HDAC4-213ENST00000496347 ZSCAN29Q8IWY8 852 aaPredicted RBP19.24■□□□□ 0.67
HDAC4-213ENST00000496347 ZFPM1Q8IX07 1006 aa19.24■□□□□ 0.67
HDAC4-213ENST00000496347 NOL10Q9BSC4 688 aaKnown RBP19.24■□□□□ 0.67
HDAC4-213ENST00000496347 R3HDMLQ9H3Y0 253 aa19.24■□□□□ 0.67
HDAC4-213ENST00000496347 DDX4Q9NQI0 724 aaKnown RBP19.24■□□□□ 0.67
HDAC4-213ENST00000496347 ATAD5Q96QE3 1844 aa19.23■□□□□ 0.67
HDAC4-213ENST00000496347 CCDC85CA6NKD9 419 aa19.23■□□□□ 0.67
HDAC4-213ENST00000496347 IRF6O14896 467 aa19.23■□□□□ 0.67
HDAC4-213ENST00000496347 CYP2E1P05181 493 aaPredicted RBP19.23■□□□□ 0.67
HDAC4-213ENST00000496347 PLCG2P16885 1265 aa19.23■□□□□ 0.67
HDAC4-213ENST00000496347 PICALMQ13492 652 aa19.23■□□□□ 0.67
HDAC4-213ENST00000496347 NAA16Q6N069 864 aaPredicted RBP19.23■□□□□ 0.67
HDAC4-213ENST00000496347 TMED8Q6PL24 325 aaPredicted RBP19.23■□□□□ 0.67
HDAC4-213ENST00000496347 AACSQ86V21 672 aa19.23■□□□□ 0.67
HDAC4-213ENST00000496347 SNRKQ9NRH2 765 aa19.23■□□□□ 0.67
HDAC4-213ENST00000496347 PHIPQ8WWQ0 1821 aa19.23■□□□□ 0.67
HDAC4-213ENST00000496347 SH3BP5LQ7L8J4 393 aa19.22■□□□□ 0.67
HDAC4-213ENST00000496347 RHPN1Q8TCX5 695 aa19.22■□□□□ 0.67
HDAC4-213ENST00000496347 KIF1BPQ96EK5 621 aa19.22■□□□□ 0.67
HDAC4-213ENST00000496347 CCDC8Q9H0W5 538 aaPredicted RBP19.22■□□□□ 0.67
HDAC4-213ENST00000496347 SIPA1L1O43166 1804 aa19.22■□□□□ 0.67
HDAC4-213ENST00000496347 PHF20L1A8MW92 1017 aa19.21■□□□□ 0.67
HDAC4-213ENST00000496347 BAG3O95817 575 aa19.21■□□□□ 0.67
HDAC4-213ENST00000496347 ZAP70P43403 619 aa19.21■□□□□ 0.67
HDAC4-213ENST00000496347 MAP3K10Q02779 954 aa19.21■□□□□ 0.67
HDAC4-213ENST00000496347 SCYL3Q8IZE3 742 aa19.21■□□□□ 0.67
HDAC4-213ENST00000496347 KCNH4Q9UQ05 1017 aa19.21■□□□□ 0.67
HDAC4-213ENST00000496347 DDTLA6NHG4 134 aaPredicted RBP19.2■□□□□ 0.66
HDAC4-213ENST00000496347 TAF1CQ15572 869 aaPredicted RBP19.2■□□□□ 0.66
HDAC4-213ENST00000496347 CERS3Q8IU89 383 aa19.2■□□□□ 0.66
HDAC4-213ENST00000496347 SIRT2Q8IXJ6 389 aa19.2■□□□□ 0.66
HDAC4-213ENST00000496347 TEX11Q8IYF3 940 aa19.2■□□□□ 0.66
HDAC4-213ENST00000496347 CLASRPQ8N2M8 674 aaKnown RBP19.2■□□□□ 0.66
HDAC4-213ENST00000496347 FAM43AQ8N2R8 423 aa19.2■□□□□ 0.66
HDAC4-213ENST00000496347 ERO1AQ96HE7 468 aa19.2■□□□□ 0.66
HDAC4-213ENST00000496347 OSBPL5Q9H0X9 879 aaPredicted RBP19.2■□□□□ 0.66
HDAC4-213ENST00000496347 PICK1Q9NRD5 415 aa19.2■□□□□ 0.66
HDAC4-213ENST00000496347 TBC1D12O60347 775 aa19.19■□□□□ 0.66
HDAC4-213ENST00000496347 RAB11FIP3O75154 756 aa19.19■□□□□ 0.66
HDAC4-213ENST00000496347 FBXO46Q6PJ61 603 aaPredicted RBP19.19■□□□□ 0.66
HDAC4-213ENST00000496347 ZFYVE28Q9HCC9 887 aa19.19■□□□□ 0.66
HDAC4-213ENST00000496347 IL1RAPL2Q9NP60 686 aa19.19■□□□□ 0.66
HDAC4-213ENST00000496347 PIH1D3Q9NQM4 214 aaKnown RBP19.19■□□□□ 0.66
HDAC4-213ENST00000496347 DDX60LQ5H9U9 1706 aaKnown RBP19.19■□□□□ 0.66
HDAC4-213ENST00000496347 CTNND1O60716 968 aaKnown RBP19.18■□□□□ 0.66
HDAC4-213ENST00000496347 PPP4CP60510 307 aa19.18■□□□□ 0.66
HDAC4-213ENST00000496347 C20orf194Q5TEA3 1177 aa19.18■□□□□ 0.66
HDAC4-213ENST00000496347 ADGRA1Q86SQ6 560 aa19.18■□□□□ 0.66
HDAC4-213ENST00000496347 SH3RF3Q8TEJ3 882 aaPredicted RBP19.18■□□□□ 0.66
HDAC4-213ENST00000496347 AATFQ9NY61 560 aaKnown RBP eCLIP19.18■□□□□ 0.66
HDAC4-213ENST00000496347 HPS5Q9UPZ3 1129 aa19.18■□□□□ 0.66
HDAC4-213ENST00000496347 LOC285556D6RIA3 1793 aa19.17■□□□□ 0.66
HDAC4-213ENST00000496347 BTBD19C9JJ37 291 aa19.17■□□□□ 0.66
HDAC4-213ENST00000496347 IDH1O75874 414 aaKnown RBP19.17■□□□□ 0.66
HDAC4-213ENST00000496347 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.17■□□□□ 0.66
HDAC4-213ENST00000496347 DHX36Q9H2U1 1008 aaKnown RBP19.17■□□□□ 0.66
HDAC4-213ENST00000496347 FLT1P17948 1338 aa19.17■□□□□ 0.66
HDAC4-213ENST00000496347 MYH1P12882 1939 aa19.17■□□□□ 0.66
HDAC4-213ENST00000496347 MYH7P12883 1935 aa19.17■□□□□ 0.66
HDAC4-213ENST00000496347 NAV1Q8NEY1 1877 aa19.16■□□□□ 0.66
HDAC4-213ENST00000496347 CXCL11O14625 94 aa19.16■□□□□ 0.66
HDAC4-213ENST00000496347 IFIT2P09913 472 aaKnown RBP19.16■□□□□ 0.66
HDAC4-213ENST00000496347 SP3Q02447 781 aa19.16■□□□□ 0.66
HDAC4-213ENST00000496347 MAP3K12Q12852 859 aa19.16■□□□□ 0.66
HDAC4-213ENST00000496347 TTF1Q15361 905 aaPredicted RBP19.16■□□□□ 0.66
HDAC4-213ENST00000496347 ANKRD23Q86SG2 305 aa19.16■□□□□ 0.66
HDAC4-213ENST00000496347 HERC5Q9UII4 1024 aaKnown RBP19.16■□□□□ 0.66
HDAC4-213ENST00000496347 TLR2O60603 784 aa19.15■□□□□ 0.66
HDAC4-213ENST00000496347 PTPRAP18433 802 aa19.15■□□□□ 0.66
HDAC4-213ENST00000496347 OTOP1Q7RTM1 612 aa19.15■□□□□ 0.66
HDAC4-213ENST00000496347 TRIM17Q9Y577 477 aa19.15■□□□□ 0.66
HDAC4-213ENST00000496347 RBBP6Q7Z6E9 1792 aaKnown RBP19.14■□□□□ 0.66
HDAC4-213ENST00000496347 BRCA2P51587 3418 aa19.14■□□□□ 0.65
HDAC4-213ENST00000496347 APBB1O00213 710 aa19.14■□□□□ 0.65
HDAC4-213ENST00000496347 CYP7A1P22680 504 aa19.14■□□□□ 0.65
HDAC4-213ENST00000496347 RGS19P49795 217 aa19.14■□□□□ 0.65
HDAC4-213ENST00000496347 ARHGEF6Q15052 776 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms