RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 TMEM87AQ8NBN3 555 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 HELBQ8NG08 1087 aaPredicted RBP8.13□□□□□ -1.11
USP39-219ENST00000496047 ZNF274Q96GC6 653 aaPredicted RBP8.13□□□□□ -1.11
USP39-219ENST00000496047 KRT23Q9C075 422 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 RNF41Q9H4P4 317 aaPredicted RBP8.13□□□□□ -1.11
USP39-219ENST00000496047 GRPEL1Q9HAV7 217 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 SEC31BQ9NQW1 1179 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 ANKRD31Q8N7Z5 1873 aa8.13□□□□□ -1.11
USP39-219ENST00000496047 TNS1Q9HBL0 1735 aaKnown RBP8.12□□□□□ -1.11
USP39-219ENST00000496047 NRXN2Q9P2S2 1712 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 PNPLA7Q6ZV29 1317 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 CPLX1O14810 134 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 PFKFB2O60825 505 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 TDO2P48775 406 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 ZNF445P59923 1031 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 UBE2HP62256 183 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 RASGRF1Q13972 1273 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 SCARF1Q14162 830 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 ALX1Q15699 326 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 SPTY2D1Q68D10 685 aaPredicted RBP8.12□□□□□ -1.11
USP39-219ENST00000496047 POTEEQ6S8J3 1075 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 SYNE3Q6ZMZ3 975 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 FBXL16Q8N461 479 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 MAGEB6Q8N7X4 407 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 NECAB1Q8N987 351 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 CNBD1Q8NA66 436 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 RPGRQ92834 1020 aaKnown RBP8.12□□□□□ -1.11
USP39-219ENST00000496047 TMEM87BQ96K49 555 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 AGXT2Q9BYV1 514 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 SCAND2PQ9GZW5 306 aaPredicted RBP8.12□□□□□ -1.11
USP39-219ENST00000496047 RAI14Q9P0K7 980 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 PPP1R1BQ9UD71 204 aaPredicted RBP8.12□□□□□ -1.11
USP39-219ENST00000496047 CFAP45Q9UL16 551 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 ZDHHC9Q9Y397 364 aa8.12□□□□□ -1.11
USP39-219ENST00000496047 FSD2A1L4K1 749 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 PATL2C9JE40 543 aaKnown RBP8.11□□□□□ -1.11
USP39-219ENST00000496047 FIBPO43427 364 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 PRC1O43663 620 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 ONECUT3O60422 494 aaPredicted RBP8.11□□□□□ -1.11
USP39-219ENST00000496047 MBD4O95243 580 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 FGAP02671 866 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 NT5C2P49902 561 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 RPS8P62241 208 aaKnown RBP8.11□□□□□ -1.11
USP39-219ENST00000496047 RBM26Q5T8P6 1007 aaKnown RBP8.11□□□□□ -1.11
USP39-219ENST00000496047 ATL3Q6DD88 541 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 KRT27Q7Z3Y8 459 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 AMOTL1Q8IY63 956 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 KRI1Q8N9T8 703 aaKnown RBP8.11□□□□□ -1.11
USP39-219ENST00000496047 RGS22Q8NE09 1264 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 TRIM44Q96DX7 344 aaPredicted RBP8.11□□□□□ -1.11
USP39-219ENST00000496047 TCEANC2Q96MN5 208 aa8.11□□□□□ -1.11
USP39-219ENST00000496047 ZNF396Q96N95 335 aaPredicted RBP8.11□□□□□ -1.11
USP39-219ENST00000496047 NOL10Q9BSC4 688 aaKnown RBP8.11□□□□□ -1.11
USP39-219ENST00000496047 PUS7LQ9H0K6 701 aaKnown RBP8.11□□□□□ -1.11
USP39-219ENST00000496047 PIH1D3Q9NQM4 214 aaKnown RBP8.11□□□□□ -1.11
USP39-219ENST00000496047 ZNF804BA4D1E1 1349 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 ELP1O95163 1332 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 MAGEB6P1A0A0J9YX57 407 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 PTPDC1A2A3K4 754 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 GOLGA8BA8MQT2 603 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 SLC3A2P08195 630 aaKnown RBP8.1□□□□□ -1.11
USP39-219ENST00000496047 PCP11498 1178 aaKnown RBP8.1□□□□□ -1.11
USP39-219ENST00000496047 HAND2P61296 217 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 EXOSC10Q01780 885 aaKnown RBP8.1□□□□□ -1.11
USP39-219ENST00000496047 APOBRQ0VD83 1088 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 TRIM29Q14134 588 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 ZSCAN23Q3MJ62 389 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 CCDC183Q5T5S1 534 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 NAA16Q6N069 864 aaPredicted RBP8.1□□□□□ -1.11
USP39-219ENST00000496047 ADGRD1Q6QNK2 874 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 LRSAM1Q6UWE0 723 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 PI16Q6UXB8 463 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 NFXL1Q6ZNB6 911 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 STOX1Q6ZVD7 989 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 TMC4Q7Z404 712 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 ZNF804AQ7Z570 1209 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 CERS3Q8IU89 383 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 MTA3Q9BTC8 594 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 TMX4Q9H1E5 349 aaPredicted RBP8.1□□□□□ -1.11
USP39-219ENST00000496047 ABCF2Q9UG63 623 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 SRP68Q9UHB9 627 aaKnown RBP8.1□□□□□ -1.11
USP39-219ENST00000496047 WWC3Q9ULE0 1092 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 MTMR6Q9Y217 621 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 SLC4A4Q9Y6R1 1079 aa8.1□□□□□ -1.11
USP39-219ENST00000496047 XDHP47989 1333 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 KLF18A0A0U1RQI7 1052 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 CCDC69A6NI79 296 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 ZMYND10O75800 440 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 CYP7A1P22680 504 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 HIBADHP31937 336 aaKnown RBP8.09□□□□□ -1.11
USP39-219ENST00000496047 NASPP49321 788 aaPredicted RBP8.09□□□□□ -1.11
USP39-219ENST00000496047 BCAMP50895 628 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 GSTO1P78417 241 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 CCDC173Q0VFZ6 552 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 SCRN1Q12765 414 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 GRAPQ13588 217 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 MFSD6Q6ZSS7 791 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 USP48Q86UV5 1035 aa8.09□□□□□ -1.11
USP39-219ENST00000496047 MB21D2Q8IYB1 491 aaPredicted RBP8.09□□□□□ -1.11
USP39-219ENST00000496047 IFNL3Q8IZI9 196 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms