RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 RRAGCQ9HB90 399 aa12.1□□□□□ -0.47
HDAC3-214ENST00000495485 CNOT7Q9UIV1 285 aaKnown RBP12.1□□□□□ -0.47
HDAC3-214ENST00000495485 MYO5AQ9Y4I1 1855 aaKnown RBP12.1□□□□□ -0.47
HDAC3-214ENST00000495485 MFSD14BQ5SR56 506 aa12.09□□□□□ -0.47
HDAC3-214ENST00000495485 GIMAP6Q6P9H5 292 aa12.09□□□□□ -0.47
HDAC3-214ENST00000495485 Q6ZUG5 572 aa12.09□□□□□ -0.47
HDAC3-214ENST00000495485 FBXL16Q8N461 479 aa12.09□□□□□ -0.47
HDAC3-214ENST00000495485 MTMR14Q8NCE2 650 aa12.09□□□□□ -0.47
HDAC3-214ENST00000495485 TNPO1Q92973 898 aaKnown RBP12.09□□□□□ -0.47
HDAC3-214ENST00000495485 KRT23Q9C075 422 aa12.09□□□□□ -0.47
HDAC3-214ENST00000495485 RNF41Q9H4P4 317 aaPredicted RBP12.09□□□□□ -0.47
HDAC3-214ENST00000495485 POLR2AP24928 1970 aaKnown RBP12.09□□□□□ -0.47
HDAC3-214ENST00000495485 WTIPA6NIX2 430 aaPredicted RBP12.08□□□□□ -0.48
HDAC3-214ENST00000495485 POTECB2RU33 542 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 KIF3CO14782 793 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 DHX16O60231 1041 aaKnown RBP12.08□□□□□ -0.48
HDAC3-214ENST00000495485 MBD4O95243 580 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 TDO2P48775 406 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 NT5C2P49902 561 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 MICALL2Q8IY33 904 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 SMC1BQ8NDV3 1235 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 LLPHQ9BRT6 129 aaKnown RBP12.08□□□□□ -0.48
HDAC3-214ENST00000495485 NMRK2Q9NPI5 230 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 PGAP2Q9UHJ9 254 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 SERPINA10Q9UK55 444 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 SLC4A4Q9Y6R1 1079 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 LAMA4Q16363 1823 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 PITPNM2Q9BZ72 1349 aa12.08□□□□□ -0.48
HDAC3-214ENST00000495485 ADAMTSL1Q8N6G6 1762 aa12.07□□□□□ -0.48
HDAC3-214ENST00000495485 MYO1BO43795 1136 aa12.07□□□□□ -0.48
HDAC3-214ENST00000495485 BAG3O95817 575 aa12.07□□□□□ -0.48
HDAC3-214ENST00000495485 LDHBP07195 334 aaKnown RBP12.07□□□□□ -0.48
HDAC3-214ENST00000495485 SLC3A2P08195 630 aaKnown RBP12.07□□□□□ -0.48
HDAC3-214ENST00000495485 PCP11498 1178 aaKnown RBP12.07□□□□□ -0.48
HDAC3-214ENST00000495485 CPA1P15085 419 aa12.07□□□□□ -0.48
HDAC3-214ENST00000495485 EXOSC10Q01780 885 aaKnown RBP12.07□□□□□ -0.48
HDAC3-214ENST00000495485 SART3Q15020 963 aaKnown RBP12.07□□□□□ -0.48
HDAC3-214ENST00000495485 CSPP1Q1MSJ5 1256 aa12.07□□□□□ -0.48
HDAC3-214ENST00000495485 DZIP1Q86YF9 867 aaKnown RBP12.07□□□□□ -0.48
HDAC3-214ENST00000495485 CCDC83Q8IWF9 413 aa12.07□□□□□ -0.48
HDAC3-214ENST00000495485 IFNL3Q8IZI9 196 aa12.07□□□□□ -0.48
HDAC3-214ENST00000495485 ZNF526Q8TF50 670 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-214ENST00000495485 FBXW7Q969H0 707 aa12.07□□□□□ -0.48
HDAC3-214ENST00000495485 ZNF274Q96GC6 653 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-214ENST00000495485 MTA3Q9BTC8 594 aa12.07□□□□□ -0.48
HDAC3-214ENST00000495485 CRNKL1Q9BZJ0 848 aaKnown RBP12.07□□□□□ -0.48
HDAC3-214ENST00000495485 IQSEC3Q9UPP2 1182 aaPredicted RBP12.07□□□□□ -0.48
HDAC3-214ENST00000495485 MYH2Q9UKX2 1941 aa12.07□□□□□ -0.48
HDAC3-214ENST00000495485 MAST2Q6P0Q8 1798 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 CHGBP05060 677 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 EPS15P42566 896 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 HMGN5P82970 282 aaKnown RBP12.06□□□□□ -0.48
HDAC3-214ENST00000495485 CHAF1AQ13111 956 aaPredicted RBP12.06□□□□□ -0.48
HDAC3-214ENST00000495485 TOB2Q14106 344 aaPredicted RBP12.06□□□□□ -0.48
HDAC3-214ENST00000495485 SLFNL1Q499Z3 407 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 HHIPL2Q6UWX4 724 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 MFSD6Q6ZSS7 791 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 AMOTL1Q8IY63 956 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 TMTC2Q8N394 836 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 TMEM87BQ96K49 555 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 AGXT2Q9BYV1 514 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 ARMT1Q9H993 441 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 MYOZ2Q9NPC6 264 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 KCNQ5Q9NR82 932 aa12.06□□□□□ -0.48
HDAC3-214ENST00000495485 ERICH2A1L162 156 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 BRD1O95696 1058 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 NCLP19338 710 aaKnown RBP12.05□□□□□ -0.48
HDAC3-214ENST00000495485 GJB2P29033 226 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 ME3Q16798 604 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 KIF4BQ2VIQ3 1234 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 CHADLQ6NUI6 762 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 BRF1Q92994 677 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 TEKT1Q969V4 418 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 ATP8A2Q9NTI2 1148 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 TPCN1Q9ULQ1 816 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 TTF2Q9UNY4 1162 aaKnown RBP12.05□□□□□ -0.48
HDAC3-214ENST00000495485 ZBTB12Q9Y330 459 aaPredicted RBP12.05□□□□□ -0.48
HDAC3-214ENST00000495485 COL1A1P02452 1464 aaPredicted RBP12.05□□□□□ -0.48
HDAC3-214ENST00000495485 TRPM7Q96QT4 1865 aa12.05□□□□□ -0.48
HDAC3-214ENST00000495485 GSG1L2A8MUP6 293 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 PRC1O43663 620 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 STX6O43752 255 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 PFKFB2O60825 505 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 BAG4O95429 457 aaKnown RBP12.04□□□□□ -0.48
HDAC3-214ENST00000495485 PLCG2P16885 1265 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 HAND2P61296 217 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 DLGAP5Q15398 846 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 AKNAD1Q5T1N1 836 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 CPLX2Q6PUV4 134 aaKnown RBP12.04□□□□□ -0.48
HDAC3-214ENST00000495485 SYNE3Q6ZMZ3 975 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 KIAA0825Q8IV33 1275 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 FAM184AQ8NB25 1140 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 GTF3C6Q969F1 213 aa12.04□□□□□ -0.48
HDAC3-214ENST00000495485 NSUN4Q96CB9 384 aaKnown RBP12.04□□□□□ -0.48
HDAC3-214ENST00000495485 FAM163AQ96GL9 167 aaPredicted RBP12.04□□□□□ -0.48
HDAC3-214ENST00000495485 EVCP57679 992 aa12.03□□□□□ -0.48
HDAC3-214ENST00000495485 MECOMQ03112 1051 aa12.03□□□□□ -0.48
HDAC3-214ENST00000495485 TNFAIP1Q13829 316 aa12.03□□□□□ -0.48
HDAC3-214ENST00000495485 EAPPQ56P03 285 aaPredicted RBP12.03□□□□□ -0.48
HDAC3-214ENST00000495485 FKBP1CQ5VVH2 108 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms