RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 HSPA1LP34931 641 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 TGFBRAP1Q8WUH2 860 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ZC3H12CQ9C0D7 883 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 UBN2Q6ZU65 1347 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CLGNO14967 610 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ERLIN1O75477 346 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 SERPINC1P01008 464 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 PRDX5P30044 214 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 PTPN21Q16825 1174 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ESR2Q92731 530 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 PCMTD1Q96MG8 357 aaPredicted RBP12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CRNKL1Q9BZJ0 848 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ANGEL1Q9UNK9 670 aaKnown RBP12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 AFF2P51816 1311 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 TOB2Q14106 344 aaPredicted RBP12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ERO1AQ96HE7 468 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 USP28Q96RU2 1077 aa12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 V9GY48 417 aaPredicted RBP12.3□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 NCAPD2Q15021 1401 aa12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 TSPY3P0CV98 308 aa12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 TSPY8P0CW00 308 aa12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 GTF2IP78347 998 aa12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 TERF2Q15554 542 aa12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CCDC96Q2M329 555 aa12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ARHGEF1Q92888 912 aaKnown RBP12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 PYCARDQ9ULZ3 195 aa12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 LINC00116Q8NCU8 138 aa12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 PDIA3P30101 505 aaKnown RBP12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 RNF41Q9H4P4 317 aaPredicted RBP12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CABP5Q9NP86 173 aa12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 BAZ2BQ9UIF8 2168 aaKnown RBP12.29□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 NR1I2O75469 434 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 GOLGA8HP0CJ92 632 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 KLRK1P26718 216 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 NEK11Q8NG66 645 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 LEO1Q8WVC0 666 aaPredicted RBP12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 NYXQ9GZU5 481 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 VPS54Q9P1Q0 977 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CAPN2P17655 700 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 RABL6Q3YEC7 729 aaPredicted RBP12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 KAT14Q9H8E8 782 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 MROH5Q6ZUA9 1318 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ECM2O94769 699 aaPredicted RBP12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 HEATR3Q7Z4Q2 680 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CEP57L1Q8IYX8 460 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CCDC34Q96HJ3 373 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 UBE2Q2LH0YL09 131 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 OLFM4Q6UX06 510 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 C3orf67Q6ZVT6 689 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CNNM3Q8NE01 707 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CPVLQ9H3G5 476 aa12.28□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 PIK3C2AO00443 1686 aa12.27□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 IVLP07476 585 aa12.27□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 CPLX3Q8WVH0 158 aa12.27□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 SENP2Q9HC62 589 aa12.27□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ARFGAP3Q9NP61 516 aa12.27□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 ZNF215Q9UL58 517 aaPredicted RBP12.27□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 SPATA31A1Q5TZJ5 1347 aa12.27□□□□□ -0.44
MSH5-SAPCD1-207ENST00000493662 SRCAPQ6ZRS2 3230 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 KIAA0754O94854 1291 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 LMOD1P29536 600 aaPredicted RBP12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CUL4AQ13619 759 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 JMYQ8N9B5 988 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 BANK1Q8NDB2 785 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DSCC1Q9BVC3 393 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SALL3Q9BXA9 1300 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 RIPOR2Q9Y4F9 1068 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SPTLC2O15270 562 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 NMT2O60551 498 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CYP2D6P10635 497 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ERCC3P19447 782 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 EIF5P55010 431 aaKnown RBP12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 TYRO3Q06418 890 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 PDE4BQ07343 736 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 TBC1D10CQ8IV04 446 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DYNLL2Q96FJ2 89 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 MYCBPQ99417 103 aaPredicted RBP12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 TM6SF1Q9BZW5 370 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CENPHQ9H3R5 247 aa12.27□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZNF609O15014 1411 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SMIM22K7EJ46 135 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 BAG3O95817 575 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ADD2P35612 726 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 HNRNPH2P55795 449 aaKnown RBP12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZSCAN26Q16670 478 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CFAP100Q494V2 611 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 KIAA0825Q8IV33 1275 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 KIAA1524Q8TCG1 905 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZSWIM5Q9P217 1185 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 ZNF174Q15697 407 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 MFSD14BQ5SR56 506 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 GPIHBP1Q8IV16 184 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 TTC14Q96N46 770 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CLIC6Q96NY7 704 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 KRT23Q9C075 422 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 CCDC70Q6NSX1 233 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 SLC51AQ86UW1 340 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 TEX11Q8IYF3 940 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 RUFY1Q96T51 708 aa12.26□□□□□ -0.45
MSH5-SAPCD1-207ENST00000493662 DNAI1Q9UI46 699 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms