RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 ATRNL1Q5VV63 1379 aa30.16■■■□□ 2.42
UPF3A-209ENST00000492270 MANSC4A6NHS7 340 aaPredicted RBP30.16■■■□□ 2.42
UPF3A-209ENST00000492270 NAA16Q6N069 864 aaPredicted RBP30.16■■■□□ 2.42
UPF3A-209ENST00000492270 TBC1D8O95759 1140 aa30.15■■■□□ 2.42
UPF3A-209ENST00000492270 INPP5BP32019 993 aa30.15■■■□□ 2.42
UPF3A-209ENST00000492270 ANTXR1Q9H6X2 564 aa30.15■■■□□ 2.42
UPF3A-209ENST00000492270 SIPA1L1O43166 1804 aa30.15■■■□□ 2.42
UPF3A-209ENST00000492270 DDTLA6NHG4 134 aaPredicted RBP30.14■■■□□ 2.42
UPF3A-209ENST00000492270 OTUD5Q96G74 571 aa30.14■■■□□ 2.42
UPF3A-209ENST00000492270 DOCK1Q14185 1865 aa30.13■■■□□ 2.41
UPF3A-209ENST00000492270 IGF2BP3O00425 579 aaKnown RBP eCLIP30.13■■■□□ 2.41
UPF3A-209ENST00000492270 IFIT2P09913 472 aaKnown RBP30.13■■■□□ 2.41
UPF3A-209ENST00000492270 SLURP2P0DP57 97 aa30.13■■■□□ 2.41
UPF3A-209ENST00000492270 ZSCAN29Q8IWY8 852 aaPredicted RBP30.13■■■□□ 2.41
UPF3A-209ENST00000492270 SH3RF3Q8TEJ3 882 aaPredicted RBP30.13■■■□□ 2.41
UPF3A-209ENST00000492270 AATFQ9NY61 560 aaKnown RBP eCLIP30.13■■■□□ 2.41
UPF3A-209ENST00000492270 IDH1O75874 414 aaKnown RBP30.12■■■□□ 2.41
UPF3A-209ENST00000492270 IFNL1Q8IU54 200 aa30.12■■■□□ 2.41
UPF3A-209ENST00000492270 ATAD5Q96QE3 1844 aa30.11■■■□□ 2.41
UPF3A-209ENST00000492270 SPDYE5A6NIY4 337 aa30.11■■■□□ 2.41
UPF3A-209ENST00000492270 SMARCA5O60264 1052 aaPredicted RBP30.11■■■□□ 2.41
UPF3A-209ENST00000492270 TEX11Q8IYF3 940 aa30.11■■■□□ 2.41
UPF3A-209ENST00000492270 ZNF112Q9UJU3 913 aa30.11■■■□□ 2.41
UPF3A-209ENST00000492270 MYH7P12883 1935 aa30.1■■■□□ 2.41
UPF3A-209ENST00000492270 INHBEP58166 350 aa30.1■■■□□ 2.41
UPF3A-209ENST00000492270 MS4A4AQ96JQ5 239 aa30.1■■■□□ 2.41
UPF3A-209ENST00000492270 CRBNQ96SW2 442 aa30.1■■■□□ 2.41
UPF3A-209ENST00000492270 NOL10Q9BSC4 688 aaKnown RBP30.1■■■□□ 2.41
UPF3A-209ENST00000492270 R3HDMLQ9H3Y0 253 aa30.1■■■□□ 2.41
UPF3A-209ENST00000492270 PCDHB15Q9Y5E8 787 aa30.1■■■□□ 2.41
UPF3A-209ENST00000492270 MYH1P12882 1939 aa30.1■■■□□ 2.41
UPF3A-209ENST00000492270 CAPN15O75808 1086 aa30.09■■■□□ 2.41
UPF3A-209ENST00000492270 PHIPQ8WWQ0 1821 aa30.09■■■□□ 2.41
UPF3A-209ENST00000492270 PTPN18Q99952 460 aa30.09■■■□□ 2.41
UPF3A-209ENST00000492270 LRRCC1Q9C099 1032 aa30.09■■■□□ 2.41
UPF3A-209ENST00000492270 COL2A1P02458 1487 aaPredicted RBP30.08■■■□□ 2.41
UPF3A-209ENST00000492270 NPM3O75607 178 aaKnown RBP30.08■■■□□ 2.41
UPF3A-209ENST00000492270 MAP4K4O95819 1239 aaPredicted RBP30.08■■■□□ 2.41
UPF3A-209ENST00000492270 ERO1BQ86YB8 467 aa30.08■■■□□ 2.41
UPF3A-209ENST00000492270 OSBPL5Q9H0X9 879 aaPredicted RBP30.08■■■□□ 2.41
UPF3A-209ENST00000492270 TESPA1A2RU30 521 aaPredicted RBP30.07■■■□□ 2.4
UPF3A-209ENST00000492270 BAG3O95817 575 aa30.07■■■□□ 2.4
UPF3A-209ENST00000492270 CYP7A1P22680 504 aa30.07■■■□□ 2.4
UPF3A-209ENST00000492270 PPP4CP60510 307 aa30.07■■■□□ 2.4
UPF3A-209ENST00000492270 DYNLL1P63167 89 aaKnown RBP30.07■■■□□ 2.4
UPF3A-209ENST00000492270 MAGEB6Q8N7X4 407 aa30.07■■■□□ 2.4
UPF3A-209ENST00000492270 DCTPP1Q9H773 170 aa30.07■■■□□ 2.4
UPF3A-209ENST00000492270 PHF20L1A8MW92 1017 aa30.06■■■□□ 2.4
UPF3A-209ENST00000492270 PPIL4Q8WUA2 492 aaKnown RBP eCLIP30.06■■■□□ 2.4
UPF3A-209ENST00000492270 BRI3BPQ8WY22 251 aa30.06■■■□□ 2.4
UPF3A-209ENST00000492270 DNAJC2Q99543 621 aaKnown RBP30.06■■■□□ 2.4
UPF3A-209ENST00000492270 PTPRFP10586 1907 aa30.06■■■□□ 2.4
UPF3A-209ENST00000492270 CCL15-CCL14A0A0B4J2E2 113 aa30.05■■■□□ 2.4
UPF3A-209ENST00000492270 IGSF3O75054 1194 aa30.05■■■□□ 2.4
UPF3A-209ENST00000492270 ALDH1A1P00352 501 aa30.05■■■□□ 2.4
UPF3A-209ENST00000492270 CCL15Q16663 113 aa30.05■■■□□ 2.4
UPF3A-209ENST00000492270 EDC3Q96F86 508 aaKnown RBP30.05■■■□□ 2.4
UPF3A-209ENST00000492270 CFHR5Q9BXR6 569 aa30.05■■■□□ 2.4
UPF3A-209ENST00000492270 FAM196BA6NMK8 535 aa30.04■■■□□ 2.4
UPF3A-209ENST00000492270 GOLIM4O00461 696 aa30.04■■■□□ 2.4
UPF3A-209ENST00000492270 IRF6O14896 467 aa30.04■■■□□ 2.4
UPF3A-209ENST00000492270 GTF2A2P52657 109 aa30.04■■■□□ 2.4
UPF3A-209ENST00000492270 MAP3K10Q02779 954 aa30.04■■■□□ 2.4
UPF3A-209ENST00000492270 PPIL2Q13356 520 aa30.04■■■□□ 2.4
UPF3A-209ENST00000492270 NOL9Q5SY16 702 aaKnown RBP30.04■■■□□ 2.4
UPF3A-209ENST00000492270 MIGA1Q8NAN2 632 aa30.04■■■□□ 2.4
UPF3A-209ENST00000492270 ZNF296Q8WUU4 475 aaPredicted RBP30.04■■■□□ 2.4
UPF3A-209ENST00000492270 GPR25O00155 361 aa30.03■■■□□ 2.4
UPF3A-209ENST00000492270 PLCG2P16885 1265 aa30.03■■■□□ 2.4
UPF3A-209ENST00000492270 MAP3K12Q12852 859 aa30.03■■■□□ 2.4
UPF3A-209ENST00000492270 DGKZQ13574 1117 aa30.03■■■□□ 2.4
UPF3A-209ENST00000492270 MAPKAPK5Q8IW41 473 aa30.03■■■□□ 2.4
UPF3A-209ENST00000492270 TGFBRAP1Q8WUH2 860 aa30.03■■■□□ 2.4
UPF3A-209ENST00000492270 MCOLN1Q9GZU1 580 aa30.03■■■□□ 2.4
UPF3A-209ENST00000492270 BOLA2Q9H3K6 86 aa30.03■■■□□ 2.4
UPF3A-209ENST00000492270 NAV1Q8NEY1 1877 aa30.03■■■□□ 2.4
UPF3A-209ENST00000492270 FLT1P17948 1338 aa30.02■■■□□ 2.4
UPF3A-209ENST00000492270 PPATQ06203 517 aa30.02■■■□□ 2.4
UPF3A-209ENST00000492270 DDX60LQ5H9U9 1706 aaKnown RBP30.02■■■□□ 2.4
UPF3A-209ENST00000492270 TTF1Q15361 905 aaPredicted RBP30.01■■■□□ 2.39
UPF3A-209ENST00000492270 ABHD8Q96I13 439 aa30.01■■■□□ 2.39
UPF3A-209ENST00000492270 ATP5JP18859 108 aa30■■■□□ 2.39
UPF3A-209ENST00000492270 CRHR2Q13324 411 aa30■■■□□ 2.39
UPF3A-209ENST00000492270 SNAPC2Q13487 334 aa29.99■■■□□ 2.39
UPF3A-209ENST00000492270 OTUD7BQ6GQQ9 843 aa29.99■■■□□ 2.39
UPF3A-209ENST00000492270 SCYL3Q8IZE3 742 aa29.99■■■□□ 2.39
UPF3A-209ENST00000492270 FAM43AQ8N2R8 423 aa29.99■■■□□ 2.39
UPF3A-209ENST00000492270 XPO5Q9HAV4 1204 aaKnown RBP eCLIP29.99■■■□□ 2.39
UPF3A-209ENST00000492270 FRMD4AQ9P2Q2 1039 aaPredicted RBP29.99■■■□□ 2.39
UPF3A-209ENST00000492270 TBC1D12O60347 775 aa29.98■■■□□ 2.39
UPF3A-209ENST00000492270 PDE6AP16499 860 aa29.98■■■□□ 2.39
UPF3A-209ENST00000492270 NOM1Q5C9Z4 860 aaKnown RBP29.98■■■□□ 2.39
UPF3A-209ENST00000492270 PAG1Q9NWQ8 432 aa29.98■■■□□ 2.39
UPF3A-209ENST00000492270 CETPP11597 493 aa29.97■■■□□ 2.39
UPF3A-209ENST00000492270 SLC9C2Q5TAH2 1124 aa29.97■■■□□ 2.39
UPF3A-209ENST00000492270 HAUS7Q99871 368 aa29.97■■■□□ 2.39
UPF3A-209ENST00000492270 SAP30BPQ9UHR5 308 aaKnown RBP29.96■■■□□ 2.39
UPF3A-209ENST00000492270 PALD1Q9ULE6 856 aa29.96■■■□□ 2.39
UPF3A-209ENST00000492270 KCNH4Q9UQ05 1017 aa29.96■■■□□ 2.39
UPF3A-209ENST00000492270 ZNF532Q9HCE3 1301 aa29.96■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms