RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 CEACAM5P06731 702 aa8.72□□□□□ -1.01
SCN1A-206ENST00000491429 ARHGAP27Q6ZUM4 889 aa8.72□□□□□ -1.01
SCN1A-206ENST00000491429 PDZD3Q86UT5 571 aa8.72□□□□□ -1.01
SCN1A-206ENST00000491429 HRASLS5Q96KN8 279 aa8.72□□□□□ -1.01
SCN1A-206ENST00000491429 DNAJC25Q9H1X3 360 aa8.72□□□□□ -1.01
SCN1A-206ENST00000491429 PCOLCE2Q9UKZ9 415 aa8.72□□□□□ -1.01
SCN1A-206ENST00000491429 TRAK1Q9UPV9 953 aa8.72□□□□□ -1.01
SCN1A-206ENST00000491429 ITIH2P19823 946 aa8.71□□□□□ -1.02
SCN1A-206ENST00000491429 TOP6BLQ8N6T0 577 aa8.71□□□□□ -1.02
SCN1A-206ENST00000491429 STK35Q8TDR2 534 aa8.71□□□□□ -1.02
SCN1A-206ENST00000491429 TMEM40Q8WWA1 233 aa8.71□□□□□ -1.02
SCN1A-206ENST00000491429 KCNB2Q92953 911 aa8.71□□□□□ -1.02
SCN1A-206ENST00000491429 ISL2Q96A47 359 aa8.71□□□□□ -1.02
SCN1A-206ENST00000491429 MKNK2Q9HBH9 465 aa8.71□□□□□ -1.02
SCN1A-206ENST00000491429 GPN3Q9UHW5 284 aaPredicted RBP8.71□□□□□ -1.02
SCN1A-206ENST00000491429 DTHD1Q6ZMT9 781 aa8.7□□□□□ -1.02
SCN1A-206ENST00000491429 SPOCD1Q6ZMY3 1216 aa8.7□□□□□ -1.02
SCN1A-206ENST00000491429 PRDM7Q9NQW5 492 aa8.7□□□□□ -1.02
SCN1A-206ENST00000491429 FCGRTP55899 365 aa8.69□□□□□ -1.02
SCN1A-206ENST00000491429 TMC1Q8TDI8 760 aa8.69□□□□□ -1.02
SCN1A-206ENST00000491429 CITED4Q96RK1 184 aa8.69□□□□□ -1.02
SCN1A-206ENST00000491429 TMEM39AQ9NV64 488 aa8.69□□□□□ -1.02
SCN1A-206ENST00000491429 TMEM265A0A087WTH1 108 aa8.68□□□□□ -1.02
SCN1A-206ENST00000491429 PKN1Q16512 942 aa8.68□□□□□ -1.02
SCN1A-206ENST00000491429 ANGEL2Q5VTE6 544 aaKnown RBP8.68□□□□□ -1.02
SCN1A-206ENST00000491429 PI16Q6UXB8 463 aa8.68□□□□□ -1.02
SCN1A-206ENST00000491429 KSR1Q8IVT5 923 aa8.68□□□□□ -1.02
SCN1A-206ENST00000491429 HEXIM2Q96MH2 286 aaKnown RBP8.68□□□□□ -1.02
SCN1A-206ENST00000491429 CSRNP1Q96S65 589 aa8.68□□□□□ -1.02
SCN1A-206ENST00000491429 SSU72Q9NP77 194 aaKnown RBP8.68□□□□□ -1.02
SCN1A-206ENST00000491429 PPP2R3AQ06190 1150 aa8.67□□□□□ -1.02
SCN1A-206ENST00000491429 ZC3H12AQ5D1E8 599 aaKnown RBP8.67□□□□□ -1.02
SCN1A-206ENST00000491429 B4GALNT3Q6L9W6 998 aa8.67□□□□□ -1.02
SCN1A-206ENST00000491429 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.67□□□□□ -1.02
SCN1A-206ENST00000491429 SULF2Q8IWU5 870 aa8.67□□□□□ -1.02
SCN1A-206ENST00000491429 TNKS2Q9H2K2 1166 aa8.67□□□□□ -1.02
SCN1A-206ENST00000491429 HNRNPUQ00839 825 aaKnown RBP eCLIP8.66□□□□□ -1.02
SCN1A-206ENST00000491429 MESP2Q0VG99 397 aa8.66□□□□□ -1.02
SCN1A-206ENST00000491429 FBLN7Q53RD9 439 aa8.66□□□□□ -1.02
SCN1A-206ENST00000491429 SLC23A3Q6PIS1 610 aa8.66□□□□□ -1.02
SCN1A-206ENST00000491429 FAM214BQ7L5A3 538 aa8.66□□□□□ -1.02
SCN1A-206ENST00000491429 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.66□□□□□ -1.02
SCN1A-206ENST00000491429 USTQ9Y2C2 406 aa8.66□□□□□ -1.02
SCN1A-206ENST00000491429 MAP1SQ66K74 1059 aaPredicted RBP8.65□□□□□ -1.02
SCN1A-206ENST00000491429 RNF214Q8ND24 703 aa8.65□□□□□ -1.02
SCN1A-206ENST00000491429 FLAD1Q8NFF5 587 aa8.65□□□□□ -1.02
SCN1A-206ENST00000491429 ARNTP27540 789 aa8.64□□□□□ -1.03
SCN1A-206ENST00000491429 ERVK-24P63145 666 aa8.64□□□□□ -1.03
SCN1A-206ENST00000491429 GPBAR1Q8TDU6 330 aa8.64□□□□□ -1.03
SCN1A-206ENST00000491429 LRRC10BA6NIK2 292 aa8.63□□□□□ -1.03
SCN1A-206ENST00000491429 MPRIPQ6WCQ1 1025 aa8.63□□□□□ -1.03
SCN1A-206ENST00000491429 UBE3DQ7Z6J8 389 aa8.63□□□□□ -1.03
SCN1A-206ENST00000491429 ZSWIM9Q86XI8 627 aa8.63□□□□□ -1.03
SCN1A-206ENST00000491429 ALKBH8Q96BT7 664 aaKnown RBP8.63□□□□□ -1.03
SCN1A-206ENST00000491429 SLC38A3Q99624 504 aa8.63□□□□□ -1.03
SCN1A-206ENST00000491429 BCO2Q9BYV7 579 aa8.63□□□□□ -1.03
SCN1A-206ENST00000491429 SNX11Q9Y5W9 270 aa8.63□□□□□ -1.03
SCN1A-206ENST00000491429 ZNF503-AS2A6NEH8 195 aa8.62□□□□□ -1.03
SCN1A-206ENST00000491429 IKZF1Q13422 519 aa8.62□□□□□ -1.03
SCN1A-206ENST00000491429 SPACA3Q8IXA5 215 aa8.62□□□□□ -1.03
SCN1A-206ENST00000491429 CSADQ9Y600 493 aa8.62□□□□□ -1.03
SCN1A-206ENST00000491429 NTF4P34130 210 aa8.61□□□□□ -1.03
SCN1A-206ENST00000491429 ZP2Q05996 745 aa8.61□□□□□ -1.03
SCN1A-206ENST00000491429 ZNF252P-AS1Q0IIN9 211 aa8.61□□□□□ -1.03
SCN1A-206ENST00000491429 PPM1JQ5JR12 505 aa8.61□□□□□ -1.03
SCN1A-206ENST00000491429 TXNDC2Q86VQ3 553 aa8.61□□□□□ -1.03
SCN1A-206ENST00000491429 ASB11Q8WXH4 323 aa8.61□□□□□ -1.03
SCN1A-206ENST00000491429 FAM84AQ96KN4 292 aa8.61□□□□□ -1.03
SCN1A-206ENST00000491429 DMRTB1Q96MA1 342 aa8.61□□□□□ -1.03
SCN1A-206ENST00000491429 NLRP2Q9NX02 1062 aa8.61□□□□□ -1.03
SCN1A-206ENST00000491429 AKAP2Q9Y2D5 859 aa8.61□□□□□ -1.03
SCN1A-206ENST00000491429 NME2P22392 152 aa8.6□□□□□ -1.03
SCN1A-206ENST00000491429 KCNMB1Q16558 191 aa8.6□□□□□ -1.03
SCN1A-206ENST00000491429 MLANAQ16655 118 aa8.6□□□□□ -1.03
SCN1A-206ENST00000491429 NKPD1Q17RQ9 610 aa8.6□□□□□ -1.03
SCN1A-206ENST00000491429 ACSBG1Q96GR2 724 aa8.6□□□□□ -1.03
SCN1A-206ENST00000491429 RBCK1Q9BYM8 510 aa8.6□□□□□ -1.03
SCN1A-206ENST00000491429 PRDM10Q9NQV6 1147 aa8.6□□□□□ -1.03
SCN1A-206ENST00000491429 PPP4R2Q9NY27 417 aa8.6□□□□□ -1.03
SCN1A-206ENST00000491429 GTF2IRD1Q9UHL9 959 aa8.6□□□□□ -1.03
SCN1A-206ENST00000491429 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.59□□□□□ -1.03
SCN1A-206ENST00000491429 XRCC5P13010 732 aaKnown RBP8.59□□□□□ -1.03
SCN1A-206ENST00000491429 NXPE4Q6UWF7 544 aa8.59□□□□□ -1.03
SCN1A-206ENST00000491429 CILP2Q8IUL8 1156 aa8.59□□□□□ -1.03
SCN1A-206ENST00000491429 KRTAP4-2Q9BYR5 136 aa8.59□□□□□ -1.03
SCN1A-206ENST00000491429 CBX8Q9HC52 389 aa8.59□□□□□ -1.03
SCN1A-206ENST00000491429 CACNA2D2Q9NY47 1150 aa8.59□□□□□ -1.03
SCN1A-206ENST00000491429 CTNND2Q9UQB3 1225 aa8.59□□□□□ -1.03
SCN1A-206ENST00000491429 IGF2BP3O00425 579 aaKnown RBP eCLIP8.58□□□□□ -1.04
SCN1A-206ENST00000491429 FYB2Q5VWT5 728 aa8.58□□□□□ -1.04
SCN1A-206ENST00000491429 GRIN3AQ8TCU5 1115 aa8.58□□□□□ -1.04
SCN1A-206ENST00000491429 LIN37Q96GY3 246 aaPredicted RBP8.58□□□□□ -1.04
SCN1A-206ENST00000491429 EMILIN2Q9BXX0 1053 aa8.58□□□□□ -1.04
SCN1A-206ENST00000491429 DCDC2CA8MYV0 355 aa8.57□□□□□ -1.04
SCN1A-206ENST00000491429 PITPNM2Q9BZ72 1349 aa8.56□□□□□ -1.04
SCN1A-206ENST00000491429 EOMESO95936 686 aa8.56□□□□□ -1.04
SCN1A-206ENST00000491429 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.56□□□□□ -1.04
SCN1A-206ENST00000491429 TMC7Q7Z402 723 aa8.56□□□□□ -1.04
SCN1A-206ENST00000491429 C12orf40Q86WS4 652 aa8.56□□□□□ -1.04
SCN1A-206ENST00000491429 C3orf58Q8NDZ4 430 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms