RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 PIM2Q9P1W9 311 aa8.63□□□□□ -1.03
PTPN4-212ENST00000488896 XPCQ01831 940 aaPredicted RBP8.62□□□□□ -1.03
PTPN4-212ENST00000488896 TAGLNQ01995 201 aaKnown RBP8.62□□□□□ -1.03
PTPN4-212ENST00000488896 SMYD4Q8IYR2 804 aaPredicted RBP8.62□□□□□ -1.03
PTPN4-212ENST00000488896 SSU72Q9NP77 194 aaKnown RBP8.62□□□□□ -1.03
PTPN4-212ENST00000488896 PICK1Q9NRD5 415 aa8.62□□□□□ -1.03
PTPN4-212ENST00000488896 DCDC2CA8MYV0 355 aa8.61□□□□□ -1.03
PTPN4-212ENST00000488896 CDK5R2Q13319 367 aa8.61□□□□□ -1.03
PTPN4-212ENST00000488896 CCDC85BQ15834 202 aaPredicted RBP8.61□□□□□ -1.03
PTPN4-212ENST00000488896 ZC3H12AQ5D1E8 599 aaKnown RBP8.61□□□□□ -1.03
PTPN4-212ENST00000488896 LRRC4CQ9HCJ2 640 aa8.61□□□□□ -1.03
PTPN4-212ENST00000488896 PCDHA4Q9UN74 947 aa8.61□□□□□ -1.03
PTPN4-212ENST00000488896 LRRC14Q15048 493 aa8.6□□□□□ -1.03
PTPN4-212ENST00000488896 MAP3K11Q16584 847 aa8.6□□□□□ -1.03
PTPN4-212ENST00000488896 MEI1Q5TIA1 1274 aa8.6□□□□□ -1.03
PTPN4-212ENST00000488896 DUSP27Q5VZP5 1158 aa8.6□□□□□ -1.03
PTPN4-212ENST00000488896 INTS5Q6P9B9 1019 aaKnown RBP8.6□□□□□ -1.03
PTPN4-212ENST00000488896 SV2BQ7L1I2 683 aa8.6□□□□□ -1.03
PTPN4-212ENST00000488896 ZNF765Q7L2R6 523 aa8.6□□□□□ -1.03
PTPN4-212ENST00000488896 GATA6Q92908 595 aa8.6□□□□□ -1.03
PTPN4-212ENST00000488896 C1GALT1Q9NS00 363 aa8.6□□□□□ -1.03
PTPN4-212ENST00000488896 TRIM37O94972 964 aa8.59□□□□□ -1.03
PTPN4-212ENST00000488896 NEFMP07197 916 aa8.59□□□□□ -1.03
PTPN4-212ENST00000488896 PPM1JQ5JR12 505 aa8.59□□□□□ -1.03
PTPN4-212ENST00000488896 SEZ6L2Q6UXD5 910 aa8.59□□□□□ -1.03
PTPN4-212ENST00000488896 C12orf40Q86WS4 652 aa8.59□□□□□ -1.03
PTPN4-212ENST00000488896 METTL22Q9BUU2 404 aaPredicted RBP8.59□□□□□ -1.03
PTPN4-212ENST00000488896 CYP26A1O43174 497 aa8.58□□□□□ -1.04
PTPN4-212ENST00000488896 DAB2P98082 770 aa8.58□□□□□ -1.04
PTPN4-212ENST00000488896 TTBK2Q6IQ55 1244 aa8.58□□□□□ -1.04
PTPN4-212ENST00000488896 FBXO33Q7Z6M2 555 aa8.58□□□□□ -1.04
PTPN4-212ENST00000488896 ANKRD24Q8TF21 1146 aa8.58□□□□□ -1.04
PTPN4-212ENST00000488896 ISL2Q96A47 359 aa8.58□□□□□ -1.04
PTPN4-212ENST00000488896 CYP8B1Q9UNU6 501 aa8.58□□□□□ -1.04
PTPN4-212ENST00000488896 LMNB1P20700 586 aa8.57□□□□□ -1.04
PTPN4-212ENST00000488896 ERVK-24P63145 666 aa8.57□□□□□ -1.04
PTPN4-212ENST00000488896 PTPN11Q06124 597 aaPredicted RBP8.57□□□□□ -1.04
PTPN4-212ENST00000488896 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.57□□□□□ -1.04
PTPN4-212ENST00000488896 ELMO3Q96BJ8 720 aa8.57□□□□□ -1.04
PTPN4-212ENST00000488896 CACNA2D2Q9NY47 1150 aa8.57□□□□□ -1.04
PTPN4-212ENST00000488896 PCOLCE2Q9UKZ9 415 aa8.57□□□□□ -1.04
PTPN4-212ENST00000488896 KIAA1324LA8MWY0 1029 aaPredicted RBP8.56□□□□□ -1.04
PTPN4-212ENST00000488896 FAM87AP0C7U9 286 aa8.56□□□□□ -1.04
PTPN4-212ENST00000488896 FOSL1P15407 271 aa8.56□□□□□ -1.04
PTPN4-212ENST00000488896 CYP27A1Q02318 531 aa8.56□□□□□ -1.04
PTPN4-212ENST00000488896 RNF214Q8ND24 703 aa8.56□□□□□ -1.04
PTPN4-212ENST00000488896 MRS2Q9HD23 443 aa8.56□□□□□ -1.04
PTPN4-212ENST00000488896 ZBTB7CA1YPR0 619 aa8.55□□□□□ -1.04
PTPN4-212ENST00000488896 SPINK2P20155 84 aa8.55□□□□□ -1.04
PTPN4-212ENST00000488896 OGFOD3Q6PK18 319 aa8.55□□□□□ -1.04
PTPN4-212ENST00000488896 TMC4Q7Z404 712 aa8.55□□□□□ -1.04
PTPN4-212ENST00000488896 PRAMEF27A3QJZ7 478 aa8.54□□□□□ -1.04
PTPN4-212ENST00000488896 ADAMTS4O75173 837 aa8.54□□□□□ -1.04
PTPN4-212ENST00000488896 SEPT6Q14141 434 aa8.54□□□□□ -1.04
PTPN4-212ENST00000488896 INPP5AQ14642 412 aa8.54□□□□□ -1.04
PTPN4-212ENST00000488896 CPSF6Q16630 551 aaKnown RBP eCLIP8.54□□□□□ -1.04
PTPN4-212ENST00000488896 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.54□□□□□ -1.04
PTPN4-212ENST00000488896 DTX1Q86Y01 620 aa8.54□□□□□ -1.04
PTPN4-212ENST00000488896 VTI1BQ9UEU0 232 aa8.54□□□□□ -1.04
PTPN4-212ENST00000488896 PCDHB5Q9Y5E4 795 aa8.54□□□□□ -1.04
PTPN4-212ENST00000488896 F6X3S4 739 aa8.53□□□□□ -1.04
PTPN4-212ENST00000488896 SORBS3O60504 671 aa8.53□□□□□ -1.04
PTPN4-212ENST00000488896 LEFTY1O75610 366 aa8.53□□□□□ -1.04
PTPN4-212ENST00000488896 CTSHP09668 335 aa8.53□□□□□ -1.04
PTPN4-212ENST00000488896 ERCC3P19447 782 aa8.53□□□□□ -1.04
PTPN4-212ENST00000488896 CDK8P49336 464 aa8.53□□□□□ -1.04
PTPN4-212ENST00000488896 TAF1CQ15572 869 aaPredicted RBP8.53□□□□□ -1.04
PTPN4-212ENST00000488896 LRFN4Q6PJG9 635 aa8.53□□□□□ -1.04
PTPN4-212ENST00000488896 CDC37L1Q7L3B6 337 aa8.53□□□□□ -1.04
PTPN4-212ENST00000488896 UBE3DQ7Z6J8 389 aa8.53□□□□□ -1.04
PTPN4-212ENST00000488896 LIG3P49916 1009 aa8.52□□□□□ -1.05
PTPN4-212ENST00000488896 CYP27C1Q4G0S4 372 aa8.52□□□□□ -1.05
PTPN4-212ENST00000488896 TOP6BLQ8N6T0 577 aa8.52□□□□□ -1.05
PTPN4-212ENST00000488896 GAL3ST3Q96A11 431 aa8.52□□□□□ -1.05
PTPN4-212ENST00000488896 PLPPR2Q96GM1 343 aa8.52□□□□□ -1.05
PTPN4-212ENST00000488896 BCL2L13Q9BXK5 485 aa8.52□□□□□ -1.05
PTPN4-212ENST00000488896 ZC3H7BQ9UGR2 993 aaKnown RBP8.52□□□□□ -1.05
PTPN4-212ENST00000488896 WNT11O96014 354 aa8.51□□□□□ -1.05
PTPN4-212ENST00000488896 MSMPQ1L6U9 139 aa8.51□□□□□ -1.05
PTPN4-212ENST00000488896 WIPI1Q5MNZ9 446 aaPredicted RBP8.51□□□□□ -1.05
PTPN4-212ENST00000488896 ZBTB37Q5TC79 503 aa8.51□□□□□ -1.05
PTPN4-212ENST00000488896 TMCO4Q5TGY1 634 aa8.51□□□□□ -1.05
PTPN4-212ENST00000488896 HDXQ7Z353 690 aa8.51□□□□□ -1.05
PTPN4-212ENST00000488896 HOMEZQ8IX15 550 aa8.51□□□□□ -1.05
PTPN4-212ENST00000488896 FAM181AQ8N9Y4 354 aa8.51□□□□□ -1.05
PTPN4-212ENST00000488896 ANGEL1Q9UNK9 670 aaKnown RBP8.51□□□□□ -1.05
PTPN4-212ENST00000488896 TLR6Q9Y2C9 796 aa8.51□□□□□ -1.05
PTPN4-212ENST00000488896 NTF4P34130 210 aa8.5□□□□□ -1.05
PTPN4-212ENST00000488896 GP2P55259 537 aaKnown RBP8.5□□□□□ -1.05
PTPN4-212ENST00000488896 SCARA3Q6AZY7 606 aa8.5□□□□□ -1.05
PTPN4-212ENST00000488896 GIPC2Q8TF65 315 aa8.5□□□□□ -1.05
PTPN4-212ENST00000488896 JARID2Q92833 1246 aaPredicted RBP8.5□□□□□ -1.05
PTPN4-212ENST00000488896 DUSP23Q9BVJ7 150 aa8.5□□□□□ -1.05
PTPN4-212ENST00000488896 FANCGO15287 622 aa8.49□□□□□ -1.05
PTPN4-212ENST00000488896 RPS26P62854 115 aaKnown RBP8.49□□□□□ -1.05
PTPN4-212ENST00000488896 RING1Q06587 406 aa8.49□□□□□ -1.05
PTPN4-212ENST00000488896 AGMOQ6ZNB7 445 aa8.49□□□□□ -1.05
PTPN4-212ENST00000488896 ARHGAP27Q6ZUM4 889 aa8.49□□□□□ -1.05
PTPN4-212ENST00000488896 OAS3Q9Y6K5 1087 aaKnown RBP8.49□□□□□ -1.05
PTPN4-212ENST00000488896 TFE3P19532 575 aaPredicted RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms