RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	IPO8	O15397	1037 aa	Known RBP	10.98	□□□□□ -0.65
USP4-213	ENST00000488520	ITGA6	P23229	1130 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	DLGAP5	Q15398	846 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	G2E3	Q7L622	706 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	OTOP1	Q7RTM1	612 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	WNK4	Q96J92	1243 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	CFHR5	Q9BXR6	569 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	DEFB129	Q9H1M3	183 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	SMC4	Q9NTJ3	1288 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	PCDHB3	Q9Y5E6	796 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	SSC5D	A1L4H1	1573 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	MANSC4	A6NHS7	340 aa	Predicted RBP	10.97	□□□□□ -0.65
USP4-213	ENST00000488520		H7C1W4	665 aa		10.97	□□□□□ -0.65
USP4-213	ENST00000488520	IGF2BP3	O00425	579 aa	Known RBP eCLIP	10.97	□□□□□ -0.65
USP4-213	ENST00000488520	ACTN4	O43707	911 aa	Known RBP	10.97	□□□□□ -0.65
USP4-213	ENST00000488520	TAF5L	O75529	589 aa		10.97	□□□□□ -0.65
USP4-213	ENST00000488520	ALDH1A1	P00352	501 aa		10.97	□□□□□ -0.65
USP4-213	ENST00000488520	CHRND	Q07001	517 aa		10.97	□□□□□ -0.65
USP4-213	ENST00000488520	CERS5	Q8N5B7	392 aa		10.97	□□□□□ -0.65
USP4-213	ENST00000488520	HELB	Q8NG08	1087 aa	Predicted RBP	10.97	□□□□□ -0.65
USP4-213	ENST00000488520	CD99L2	Q8TCZ2	262 aa		10.97	□□□□□ -0.65
USP4-213	ENST00000488520	ZBED3	Q96IU2	234 aa	Predicted RBP	10.97	□□□□□ -0.65
USP4-213	ENST00000488520	ANKRD2	Q9GZV1	360 aa		10.97	□□□□□ -0.65
USP4-213	ENST00000488520	CD209	Q9NNX6	404 aa		10.97	□□□□□ -0.65
USP4-213	ENST00000488520	JAG2	Q9Y219	1238 aa		10.97	□□□□□ -0.65
USP4-213	ENST00000488520	COL1A1	P02452	1464 aa	Predicted RBP	10.96	□□□□□ -0.65
USP4-213	ENST00000488520	AOX1	Q06278	1338 aa		10.96	□□□□□ -0.65
USP4-213	ENST00000488520	PPP1R12B	O60237	982 aa	Predicted RBP	10.96	□□□□□ -0.65
USP4-213	ENST00000488520	MMP14	P50281	582 aa		10.96	□□□□□ -0.65
USP4-213	ENST00000488520	INHBE	P58166	350 aa		10.96	□□□□□ -0.65
USP4-213	ENST00000488520	COPS2	P61201	443 aa		10.96	□□□□□ -0.65
USP4-213	ENST00000488520	NBPF12	Q5TAG4	269 aa	Predicted RBP	10.96	□□□□□ -0.65
USP4-213	ENST00000488520	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	10.96	□□□□□ -0.65
USP4-213	ENST00000488520	GCC1	Q96CN9	775 aa		10.96	□□□□□ -0.65
USP4-213	ENST00000488520	VEZT	Q9HBM0	779 aa		10.96	□□□□□ -0.65
USP4-213	ENST00000488520	DDX11L8	A8MPP1	907 aa		10.95	□□□□□ -0.66
USP4-213	ENST00000488520	ZMYND10	O75800	440 aa		10.95	□□□□□ -0.66
USP4-213	ENST00000488520	EN2	P19622	333 aa	Predicted RBP	10.95	□□□□□ -0.66
USP4-213	ENST00000488520	GJA5	P36382	358 aa		10.95	□□□□□ -0.66
USP4-213	ENST00000488520	RBM5	P52756	815 aa	Known RBP eCLIP	10.95	□□□□□ -0.66
USP4-213	ENST00000488520	CRHR2	Q13324	411 aa		10.95	□□□□□ -0.66
USP4-213	ENST00000488520	FKBP5	Q13451	457 aa	Predicted RBP	10.95	□□□□□ -0.66
USP4-213	ENST00000488520	GCKR	Q14397	625 aa		10.95	□□□□□ -0.66
USP4-213	ENST00000488520	CFAP100	Q494V2	611 aa		10.95	□□□□□ -0.66
USP4-213	ENST00000488520	HABP4	Q5JVS0	413 aa	Known RBP	10.95	□□□□□ -0.66
USP4-213	ENST00000488520	RDH13	Q8NBN7	331 aa		10.95	□□□□□ -0.66
USP4-213	ENST00000488520	SSH1	Q8WYL5	1049 aa		10.95	□□□□□ -0.66
USP4-213	ENST00000488520	FRAT1	Q92837	279 aa	Predicted RBP	10.95	□□□□□ -0.66
USP4-213	ENST00000488520	ERO1A	Q96HE7	468 aa		10.95	□□□□□ -0.66
USP4-213	ENST00000488520	PRMT6	Q96LA8	375 aa	Predicted RBP	10.95	□□□□□ -0.66
USP4-213	ENST00000488520	MYO1B	O43795	1136 aa		10.94	□□□□□ -0.66
USP4-213	ENST00000488520	PLIN1	O60240	522 aa		10.94	□□□□□ -0.66
USP4-213	ENST00000488520	USP2	O75604	605 aa	Predicted RBP	10.94	□□□□□ -0.66
USP4-213	ENST00000488520	CENPB	P07199	599 aa	Predicted RBP	10.94	□□□□□ -0.66
USP4-213	ENST00000488520	ZBTB48	P10074	688 aa	Predicted RBP	10.94	□□□□□ -0.66
USP4-213	ENST00000488520	MS4A1	P11836	297 aa		10.94	□□□□□ -0.66
USP4-213	ENST00000488520	RARS	P54136	660 aa	Known RBP	10.94	□□□□□ -0.66
USP4-213	ENST00000488520	CAP1	Q01518	475 aa		10.94	□□□□□ -0.66
USP4-213	ENST00000488520	FLII	Q13045	1269 aa		10.94	□□□□□ -0.66
USP4-213	ENST00000488520	MAP3K11	Q16584	847 aa		10.94	□□□□□ -0.66
USP4-213	ENST00000488520	INTS3	Q68E01	1043 aa	Known RBP	10.94	□□□□□ -0.66
USP4-213	ENST00000488520	KRI1	Q8N9T8	703 aa	Known RBP	10.94	□□□□□ -0.66
USP4-213	ENST00000488520	ZNF516	Q92618	1163 aa		10.94	□□□□□ -0.66
USP4-213	ENST00000488520	RCAN3	Q9UKA8	241 aa		10.94	□□□□□ -0.66
USP4-213	ENST00000488520	PTPN22	Q9Y2R2	807 aa		10.94	□□□□□ -0.66
USP4-213	ENST00000488520	CHMP3	Q9Y3E7	222 aa		10.94	□□□□□ -0.66
USP4-213	ENST00000488520	DOCK3	Q8IZD9	2030 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	TRIOBP	Q9H2D6	2365 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	ANKRD18B	A2A2Z9	1011 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	CSF1R	P07333	972 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	IREB2	P48200	963 aa	Known RBP	10.93	□□□□□ -0.66
USP4-213	ENST00000488520	CASP7	P55210	303 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	SUPT20HL1	Q3ZLR7	823 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	OTUD7B	Q6GQQ9	843 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	MTMR14	Q8NCE2	650 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	PTPN18	Q99952	460 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	PLA2G12B	Q9BX93	195 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	API5	Q9BZZ5	524 aa	Known RBP	10.93	□□□□□ -0.66
USP4-213	ENST00000488520	ELP3	Q9H9T3	547 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	EFCC1	Q9HA90	598 aa		10.93	□□□□□ -0.66
USP4-213	ENST00000488520	NOB1	Q9ULX3	412 aa	Known RBP	10.93	□□□□□ -0.66
USP4-213	ENST00000488520	PTPRC	P08575	1304 aa		10.92	□□□□□ -0.66
USP4-213	ENST00000488520	IRS2	Q9Y4H2	1338 aa		10.92	□□□□□ -0.66
USP4-213	ENST00000488520	MYC	P01106	439 aa	Predicted RBP	10.92	□□□□□ -0.66
USP4-213	ENST00000488520	SP3	Q02447	781 aa		10.92	□□□□□ -0.66
USP4-213	ENST00000488520	RASA3	Q14644	834 aa		10.92	□□□□□ -0.66
USP4-213	ENST00000488520	BLOC1S3	Q6QNY0	202 aa		10.92	□□□□□ -0.66
USP4-213	ENST00000488520	SLC4A10	Q6U841	1118 aa		10.92	□□□□□ -0.66
USP4-213	ENST00000488520	ZNF804A	Q7Z570	1209 aa		10.92	□□□□□ -0.66
USP4-213	ENST00000488520	ANKRD13A	Q8IZ07	590 aa		10.92	□□□□□ -0.66
USP4-213	ENST00000488520	PPP2R3B	Q9Y5P8	575 aa		10.92	□□□□□ -0.66
USP4-213	ENST00000488520	KIF16B	Q96L93	1317 aa		10.91	□□□□□ -0.66
USP4-213	ENST00000488520	BCAR3	O75815	825 aa		10.91	□□□□□ -0.66
USP4-213	ENST00000488520	RGS20	O76081	388 aa		10.91	□□□□□ -0.66
USP4-213	ENST00000488520	IL1R1	P14778	569 aa		10.91	□□□□□ -0.66
USP4-213	ENST00000488520	MDM2	Q00987	491 aa	Predicted RBP	10.91	□□□□□ -0.66
USP4-213	ENST00000488520	ZKSCAN2	Q63HK3	967 aa		10.91	□□□□□ -0.66
USP4-213	ENST00000488520	DNAAF4	Q8WXU2	420 aa		10.91	□□□□□ -0.66
USP4-213	ENST00000488520	OPTN	Q96CV9	577 aa		10.91	□□□□□ -0.66
USP4-213	ENST00000488520	ZNF594	Q96JF6	807 aa	Predicted RBP	10.91	□□□□□ -0.66

Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms