RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 DDX4Q9NQI0 724 aaKnown RBP17.92■□□□□ 0.46
USP4-212ENST00000486549 SAGE1Q9NXZ1 904 aa17.92■□□□□ 0.46
USP4-212ENST00000486549 FAM155AB1AL88 458 aaPredicted RBP17.91■□□□□ 0.46
USP4-212ENST00000486549 IGSF3O75054 1194 aa17.91■□□□□ 0.46
USP4-212ENST00000486549 ENTPD3O75355 529 aa17.91■□□□□ 0.46
USP4-212ENST00000486549 USP2O75604 605 aaPredicted RBP17.91■□□□□ 0.46
USP4-212ENST00000486549 DYNLL1P63167 89 aaKnown RBP17.91■□□□□ 0.46
USP4-212ENST00000486549 SLC9C2Q5TAH2 1124 aa17.91■□□□□ 0.46
USP4-212ENST00000486549 ZSCAN29Q8IWY8 852 aaPredicted RBP17.91■□□□□ 0.46
USP4-212ENST00000486549 FOCADQ5VW36 1801 aa17.91■□□□□ 0.46
USP4-212ENST00000486549 UNCXA6NJT0 531 aa17.9■□□□□ 0.46
USP4-212ENST00000486549 PDE6AP16499 860 aa17.9■□□□□ 0.46
USP4-212ENST00000486549 MKRN3Q13064 507 aaKnown RBP17.9■□□□□ 0.46
USP4-212ENST00000486549 MAP3K11Q16584 847 aa17.9■□□□□ 0.46
USP4-212ENST00000486549 LDLRAD1Q5T700 205 aa17.9■□□□□ 0.46
USP4-212ENST00000486549 MIGA2Q7L4E1 593 aa17.9■□□□□ 0.46
USP4-212ENST00000486549 HOOK2Q96ED9 719 aa17.9■□□□□ 0.46
USP4-212ENST00000486549 CLMNQ96JQ2 1002 aa17.9■□□□□ 0.46
USP4-212ENST00000486549 ZIC5Q96T25 663 aa17.9■□□□□ 0.46
USP4-212ENST00000486549 MAP4K4O95819 1239 aaPredicted RBP17.89■□□□□ 0.45
USP4-212ENST00000486549 PLCG2P16885 1265 aa17.89■□□□□ 0.45
USP4-212ENST00000486549 MX1P20591 662 aa17.89■□□□□ 0.45
USP4-212ENST00000486549 PPP4CP60510 307 aa17.89■□□□□ 0.45
USP4-212ENST00000486549 KIF23Q02241 960 aaPredicted RBP17.89■□□□□ 0.45
USP4-212ENST00000486549 DCAF15Q66K64 600 aa17.89■□□□□ 0.45
USP4-212ENST00000486549 SMC5Q8IY18 1101 aa17.89■□□□□ 0.45
USP4-212ENST00000486549 CSRNP1Q96S65 589 aa17.89■□□□□ 0.45
USP4-212ENST00000486549 LNPKQ9C0E8 428 aa17.89■□□□□ 0.45
USP4-212ENST00000486549 TTC41PQ6P2S7 1318 aa17.89■□□□□ 0.45
USP4-212ENST00000486549 ZNF532Q9HCE3 1301 aa17.89■□□□□ 0.45
USP4-212ENST00000486549 MAPKAPK5Q8IW41 473 aa17.88■□□□□ 0.45
USP4-212ENST00000486549 ANKRD13AQ8IZ07 590 aa17.88■□□□□ 0.45
USP4-212ENST00000486549 TGFBRAP1Q8WUH2 860 aa17.88■□□□□ 0.45
USP4-212ENST00000486549 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.88■□□□□ 0.458e-7■■■■□ 23.1
USP4-212ENST00000486549 DDTLA6NHG4 134 aaPredicted RBP17.87■□□□□ 0.45
USP4-212ENST00000486549 ERC2O15083 957 aa17.87■□□□□ 0.45
USP4-212ENST00000486549 SLFNL1Q499Z3 407 aa17.87■□□□□ 0.45
USP4-212ENST00000486549 SH3BP5LQ7L8J4 393 aa17.87■□□□□ 0.45
USP4-212ENST00000486549 SLC10A4Q96EP9 437 aa17.87■□□□□ 0.45
USP4-212ENST00000486549 WRNIP1Q96S55 665 aa17.87■□□□□ 0.45
USP4-212ENST00000486549 ZNF341Q9BYN7 854 aa17.87■□□□□ 0.45
USP4-212ENST00000486549 OSBPL5Q9H0X9 879 aaPredicted RBP17.87■□□□□ 0.45
USP4-212ENST00000486549 ELP3Q9H9T3 547 aa17.87■□□□□ 0.45
USP4-212ENST00000486549 MAGEB6P1A0A0J9YX57 407 aa17.86■□□□□ 0.45
USP4-212ENST00000486549 TMED8Q6PL24 325 aaPredicted RBP17.86■□□□□ 0.45
USP4-212ENST00000486549 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.86■□□□□ 0.45
USP4-212ENST00000486549 PI4K2BQ8TCG2 481 aa17.86■□□□□ 0.45
USP4-212ENST00000486549 FLT1P17948 1338 aa17.86■□□□□ 0.45
USP4-212ENST00000486549 SALL3Q9BXA9 1300 aa17.86■□□□□ 0.45
USP4-212ENST00000486549 NAV1Q8NEY1 1877 aa17.86■□□□□ 0.45
USP4-212ENST00000486549 MYH1P12882 1939 aa17.86■□□□□ 0.45
USP4-212ENST00000486549 TCRBV5S4A2TA0A5A2 114 aa17.85■□□□□ 0.45
USP4-212ENST00000486549 NPM3O75607 178 aaKnown RBP17.85■□□□□ 0.45
USP4-212ENST00000486549 GLRX3O76003 335 aaKnown RBP17.85■□□□□ 0.45
USP4-212ENST00000486549 CHGBP05060 677 aa17.85■□□□□ 0.45
USP4-212ENST00000486549 SLURP2P0DP57 97 aa17.85■□□□□ 0.45
USP4-212ENST00000486549 ADD2P35612 726 aa17.85■□□□□ 0.45
USP4-212ENST00000486549 USP5P45974 858 aa17.85■□□□□ 0.45
USP4-212ENST00000486549 MAP3K9P80192 1104 aa17.85■□□□□ 0.45
USP4-212ENST00000486549 SREBF2Q12772 1141 aa17.85■□□□□ 0.45
USP4-212ENST00000486549 VGLL4Q14135 290 aa17.85■□□□□ 0.45
USP4-212ENST00000486549 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.85■□□□□ 0.45
USP4-212ENST00000486549 CHD1LQ86WJ1 897 aa17.85■□□□□ 0.45
USP4-212ENST00000486549 CSADQ9Y600 493 aa17.85■□□□□ 0.45
USP4-212ENST00000486549 COL2A1P02458 1487 aaPredicted RBP17.84■□□□□ 0.45
USP4-212ENST00000486549 ATRNL1Q5VV63 1379 aa17.84■□□□□ 0.45
USP4-212ENST00000486549 CAPN15O75808 1086 aa17.84■□□□□ 0.45
USP4-212ENST00000486549 NUCB1Q02818 461 aa17.84■□□□□ 0.45
USP4-212ENST00000486549 SLC4A8Q2Y0W8 1093 aa17.84■□□□□ 0.45
USP4-212ENST00000486549 SPRYD7Q5W111 196 aa17.84■□□□□ 0.45
USP4-212ENST00000486549 CERS3Q8IU89 383 aa17.84■□□□□ 0.45
USP4-212ENST00000486549 ZKSCAN4Q969J2 545 aaPredicted RBP17.84■□□□□ 0.45
USP4-212ENST00000486549 WNK4Q96J92 1243 aa17.84■□□□□ 0.45
USP4-212ENST00000486549 RIOK1Q9BRS2 568 aaKnown RBP17.84■□□□□ 0.45
USP4-212ENST00000486549 SAP30BPQ9UHR5 308 aaKnown RBP17.84■□□□□ 0.45
USP4-212ENST00000486549 SIPA1L1O43166 1804 aa17.84■□□□□ 0.45
USP4-212ENST00000486549 FAM196BA6NMK8 535 aa17.83■□□□□ 0.44
USP4-212ENST00000486549 INPP5BP32019 993 aa17.83■□□□□ 0.44
USP4-212ENST00000486549 PDE1AP54750 535 aa17.83■□□□□ 0.44
USP4-212ENST00000486549 INHBEP58166 350 aa17.83■□□□□ 0.44
USP4-212ENST00000486549 ZSCAN25Q6NSZ9 544 aa17.83■□□□□ 0.44
USP4-212ENST00000486549 LCORLQ8N3X6 602 aa17.83■□□□□ 0.44
USP4-212ENST00000486549 KBTBD3Q8NAB2 608 aa17.83■□□□□ 0.44
USP4-212ENST00000486549 ARMT1Q9H993 441 aa17.83■□□□□ 0.44
USP4-212ENST00000486549 RNF186Q9NXI6 227 aa17.83■□□□□ 0.44
USP4-212ENST00000486549 TSKSQ9UJT2 592 aa17.83■□□□□ 0.44
USP4-212ENST00000486549 TRPA1O75762 1119 aa17.82■□□□□ 0.44
USP4-212ENST00000486549 MBD4O95243 580 aa17.82■□□□□ 0.44
USP4-212ENST00000486549 UBE3CQ15386 1083 aa17.82■□□□□ 0.44
USP4-212ENST00000486549 CNKSR2Q8WXI2 1034 aa17.82■□□□□ 0.44
USP4-212ENST00000486549 OPTNQ96CV9 577 aa17.82■□□□□ 0.44
USP4-212ENST00000486549 FSD1Q9BTV5 496 aa17.82■□□□□ 0.44
USP4-212ENST00000486549 CRNKL1Q9BZJ0 848 aaKnown RBP17.82■□□□□ 0.44
USP4-212ENST00000486549 SNCAIPQ9Y6H5 919 aa17.82■□□□□ 0.44
USP4-212ENST00000486549 ALDH1A1P00352 501 aa17.81■□□□□ 0.44
USP4-212ENST00000486549 ZBTB48P10074 688 aaPredicted RBP17.81■□□□□ 0.44
USP4-212ENST00000486549 GJA5P36382 358 aa17.81■□□□□ 0.44
USP4-212ENST00000486549 TM4SF4P48230 202 aa17.81■□□□□ 0.44
USP4-212ENST00000486549 OTUD5Q96G74 571 aa17.81■□□□□ 0.44
USP4-212ENST00000486549 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms