RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ANKRD45Q5TZF3 282 aa9.76□□□□□ -0.85
USP40-216ENST00000485943 NAA16Q6N069 864 aaPredicted RBP9.76□□□□□ -0.85
USP40-216ENST00000485943 CDCA5Q96FF9 252 aa9.76□□□□□ -0.85
USP40-216ENST00000485943 DDRGK1Q96HY6 314 aa9.76□□□□□ -0.85
USP40-216ENST00000485943 TDRD3Q9H7E2 651 aaKnown RBP9.76□□□□□ -0.85
USP40-216ENST00000485943 PPP2R3BQ9Y5P8 575 aa9.76□□□□□ -0.85
USP40-216ENST00000485943 ECM29Q5VYK3 1845 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 EGFRP00533 1210 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 PRDX5P30044 214 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 IREB2P48200 963 aaKnown RBP9.75□□□□□ -0.85
USP40-216ENST00000485943 HTRA3P83110 453 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 HHIPL2Q6UWX4 724 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 AMOTL1Q8IY63 956 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 CERS5Q8N5B7 392 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 GCC1Q96CN9 775 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 GMLQ99445 158 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 DEFB129Q9H1M3 183 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 USP40Q9NVE5 1235 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 ZNF70Q9UC06 446 aaPredicted RBP9.75□□□□□ -0.85
USP40-216ENST00000485943 SCAF8Q9UPN6 1271 aaKnown RBP9.75□□□□□ -0.85
USP40-216ENST00000485943 MYH2Q9UKX2 1941 aa9.75□□□□□ -0.85
USP40-216ENST00000485943 ARID4AP29374 1257 aaPredicted RBP9.74□□□□□ -0.85
USP40-216ENST00000485943 ZNF157P51786 506 aaPredicted RBP9.74□□□□□ -0.85
USP40-216ENST00000485943 MAP2K5Q13163 448 aa9.74□□□□□ -0.85
USP40-216ENST00000485943 PICALMQ13492 652 aa9.74□□□□□ -0.85
USP40-216ENST00000485943 DCAF15Q66K64 600 aa9.74□□□□□ -0.85
USP40-216ENST00000485943 ZSCAN25Q6NSZ9 544 aa9.74□□□□□ -0.85
USP40-216ENST00000485943 MTMR14Q8NCE2 650 aa9.74□□□□□ -0.85
USP40-216ENST00000485943 EAF2Q96CJ1 260 aaPredicted RBP9.74□□□□□ -0.85
USP40-216ENST00000485943 HMG20BQ9P0W2 317 aa9.74□□□□□ -0.85
USP40-216ENST00000485943 ANGEL1Q9UNK9 670 aaKnown RBP9.74□□□□□ -0.85
USP40-216ENST00000485943 PDS5AQ29RF7 1337 aaKnown RBP9.74□□□□□ -0.85
USP40-216ENST00000485943 SALL1Q9NSC2 1324 aa9.74□□□□□ -0.85
USP40-216ENST00000485943 COL1A1P02452 1464 aaPredicted RBP9.73□□□□□ -0.85
USP40-216ENST00000485943 SMARCA5O60264 1052 aaPredicted RBP9.73□□□□□ -0.85
USP40-216ENST00000485943 ITGBL1O95965 494 aaPredicted RBP9.73□□□□□ -0.85
USP40-216ENST00000485943 FECHP22830 423 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 MCAMP43121 646 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 BTDP43251 543 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 ZAP70P43403 619 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 USP5P45974 858 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 FKBP1BP68106 108 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 PDE4DQ08499 809 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 TCP10Q12799 353 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 PTGDRQ13258 359 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 HIC1Q14526 733 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 RASA3Q14644 834 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 DIXDC1Q155Q3 683 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 PRAMEF18Q5VWM3 479 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 B4GALNT3Q6L9W6 998 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 TBC1D9Q6ZT07 1266 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 CERS3Q8IU89 383 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 EXOC6Q8TAG9 804 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 KLRG1Q96E93 195 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 PRMT6Q96LA8 375 aaPredicted RBP9.73□□□□□ -0.85
USP40-216ENST00000485943 ZDHHC15Q96MV8 337 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 BOLA2Q9H3K6 86 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 PGAP2Q9UHJ9 254 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 DBNLQ9UJU6 430 aaKnown RBP9.73□□□□□ -0.85
USP40-216ENST00000485943 PCDHGA4Q9Y5G9 962 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 CSADQ9Y600 493 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 ASTN2O75129 1339 aaPredicted RBP9.73□□□□□ -0.85
USP40-216ENST00000485943 PASKQ96RG2 1323 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 IRS2Q9Y4H2 1338 aa9.73□□□□□ -0.85
USP40-216ENST00000485943 GOLIM4O00461 696 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 WDHD1O75717 1129 aaPredicted RBP9.72□□□□□ -0.85
USP40-216ENST00000485943 CYP7A1P22680 504 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 MECOMQ03112 1051 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 PI16Q6UXB8 463 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 TEX11Q8IYF3 940 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 MAGEB6Q8N7X4 407 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 CCDC102AQ96A19 550 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 CAPNS2Q96L46 248 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 MRIQ9BWK5 157 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 DCTPP1Q9H773 170 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 ECHDC1Q9NTX5 307 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 PAG1Q9NWQ8 432 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 TLR7Q9NYK1 1049 aaKnown RBP9.72□□□□□ -0.85
USP40-216ENST00000485943 DAGLAQ9Y4D2 1042 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 MROH7-TTC4A0A0A0MT08 1334 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 ADAMTSL1Q8N6G6 1762 aa9.72□□□□□ -0.85
USP40-216ENST00000485943 TRIM6-TRIM34B2RNG4 842 aa9.71□□□□□ -0.86
USP40-216ENST00000485943 IRF6O14896 467 aa9.71□□□□□ -0.86
USP40-216ENST00000485943 IGSF3O75054 1194 aa9.71□□□□□ -0.86
USP40-216ENST00000485943 HLA-DOAP06340 250 aa9.71□□□□□ -0.86
USP40-216ENST00000485943 CACNB3P54284 484 aa9.71□□□□□ -0.86
USP40-216ENST00000485943 MAP2K1Q02750 393 aaPredicted RBP9.71□□□□□ -0.86
USP40-216ENST00000485943 FMR1Q06787 632 aaKnown RBP eCLIP9.71□□□□□ -0.86
USP40-216ENST00000485943 RGMBQ6NW40 437 aa9.71□□□□□ -0.86
USP40-216ENST00000485943 CRACR2BQ8N4Y2 399 aaPredicted RBP9.71□□□□□ -0.86
USP40-216ENST00000485943 SLC10A4Q96EP9 437 aa9.71□□□□□ -0.86
USP40-216ENST00000485943 ZNF512BQ96KM6 892 aaPredicted RBP9.71□□□□□ -0.86
USP40-216ENST00000485943 KDM4CQ9H3R0 1056 aa9.71□□□□□ -0.86
USP40-216ENST00000485943 AATFQ9NY61 560 aaKnown RBP eCLIP9.71□□□□□ -0.86
USP40-216ENST00000485943 PCDHB15Q9Y5E8 787 aa9.71□□□□□ -0.86
USP40-216ENST00000485943 TLL2Q9Y6L7 1015 aa9.71□□□□□ -0.86
USP40-216ENST00000485943 POTEB2H3BUK9 544 aa9.7□□□□□ -0.86
USP40-216ENST00000485943 MAP4K4O95819 1239 aaPredicted RBP9.7□□□□□ -0.86
USP40-216ENST00000485943 SLC9C2Q5TAH2 1124 aa9.7□□□□□ -0.86
USP40-216ENST00000485943 CYP4F22Q6NT55 531 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms