RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.46□□□□□ -1.38
CCDC39-205ENST00000485055 HACL1Q9UJ83 578 aa6.46□□□□□ -1.38
CCDC39-205ENST00000485055 ZNRF3Q9ULT6 936 aa6.46□□□□□ -1.38
CCDC39-205ENST00000485055 NDUFB9Q9Y6M9 179 aa6.46□□□□□ -1.38
CCDC39-205ENST00000485055 KIF16BQ96L93 1317 aa6.46□□□□□ -1.38
CCDC39-205ENST00000485055 PITPNM2Q9BZ72 1349 aa6.46□□□□□ -1.38
CCDC39-205ENST00000485055 VAMP4O75379 141 aa6.45□□□□□ -1.38
CCDC39-205ENST00000485055 LDHCP07864 332 aa6.45□□□□□ -1.38
CCDC39-205ENST00000485055 GTF2E1P29083 439 aaPredicted RBP6.45□□□□□ -1.38
CCDC39-205ENST00000485055 ZNF280AP59817 542 aaPredicted RBP6.45□□□□□ -1.38
CCDC39-205ENST00000485055 C3orf67Q6ZVT6 689 aa6.45□□□□□ -1.38
CCDC39-205ENST00000485055 ASB16Q96NS5 453 aa6.45□□□□□ -1.38
CCDC39-205ENST00000485055 PUF60Q9UHX1 559 aaKnown RBP6.45□□□□□ -1.38
CCDC39-205ENST00000485055 ALDH1L1O75891 902 aa6.45□□□□□ -1.38
CCDC39-205ENST00000485055 TNIP1Q15025 636 aa6.45□□□□□ -1.38
CCDC39-205ENST00000485055 WASHC4Q2M389 1173 aa6.45□□□□□ -1.38
CCDC39-205ENST00000485055 NBPF11Q86T75 865 aa6.45□□□□□ -1.38
CCDC39-205ENST00000485055 C8orf58Q8NAV2 365 aa6.45□□□□□ -1.38
CCDC39-205ENST00000485055 CEP63Q96MT8 703 aa6.45□□□□□ -1.38
CCDC39-205ENST00000485055 ZBTB12Q9Y330 459 aaPredicted RBP6.45□□□□□ -1.38
CCDC39-205ENST00000485055 ZNF541Q9H0D2 1346 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 NRDCO43847 1150 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 P4HBP07237 508 aaKnown RBP6.44□□□□□ -1.38
CCDC39-205ENST00000485055 VIL1P09327 827 aaKnown RBP6.44□□□□□ -1.38
CCDC39-205ENST00000485055 ATP2B4P23634 1241 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 BICDL1Q6ZP65 573 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 FERMT3Q86UX7 667 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 REM2Q8IYK8 340 aaPredicted RBP6.44□□□□□ -1.38
CCDC39-205ENST00000485055 CWC25Q9NXE8 425 aaPredicted RBP6.44□□□□□ -1.38
CCDC39-205ENST00000485055 INTUQ9ULD6 942 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 SCINQ9Y6U3 715 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 RBBP6Q7Z6E9 1792 aaKnown RBP6.44□□□□□ -1.38
CCDC39-205ENST00000485055 SENP3-EIF4A1A0A087X0R7 540 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 SCNN1DP51172 638 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 POU5F1Q01860 360 aaKnown RBP6.44□□□□□ -1.38
CCDC39-205ENST00000485055 GOLGA2Q08379 1002 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 ELOAQ14241 798 aaKnown RBP6.44□□□□□ -1.38
CCDC39-205ENST00000485055 LRRC41Q15345 812 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 DDX46Q7L014 1031 aaKnown RBP6.44□□□□□ -1.38
CCDC39-205ENST00000485055 MCF2L2Q86YR7 1114 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 C16orf71Q8IYS4 520 aaPredicted RBP6.44□□□□□ -1.38
CCDC39-205ENST00000485055 C8orf48Q96LL4 319 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 EYA3Q99504 573 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 RRP7AQ9Y3A4 280 aaKnown RBP6.44□□□□□ -1.38
CCDC39-205ENST00000485055 FANCIQ9NVI1 1328 aa6.44□□□□□ -1.38
CCDC39-205ENST00000485055 FGAP02671 866 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 IGKV5-2P06315 115 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 ALDH1L2Q3SY69 923 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 ERICH6BQ5W0A0 696 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 KANK3Q6NY19 840 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 RIC3Q7Z5B4 369 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 DEPDC4Q8N2C3 294 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 AGBL3Q8NEM8 1001 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 LINS1Q8NG48 757 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 ARMC5Q96C12 935 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 RNPC3Q96LT9 517 aaKnown RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 NAP1L4Q99733 375 aaKnown RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 ZBTB3Q9H5J0 574 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 ADARB2Q9NS39 739 aaKnown RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 GPRC5DQ9NZD1 345 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 PTPRCP08575 1304 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 ATP9BO43861 1147 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 FOSP01100 380 aaPredicted RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 MYL6BP14649 208 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 EIF6P56537 245 aaKnown RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 LONRF1Q17RB8 773 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 PUS10Q3MIT2 529 aaKnown RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 CCDC152Q4G0S7 254 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 ZNF394Q53GI3 561 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 PCGF5Q86SE9 256 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 MPNDQ8N594 471 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 EPS8L1Q8TE68 723 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 ZBED3Q96IU2 234 aaPredicted RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 TRMT112Q9UI30 125 aaKnown RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 MYO3BQ8WXR4 1341 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 NEURL1BA8MQ27 555 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 K7ELQ4 463 aaPredicted RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 RRM1P23921 792 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 EPHX2P34913 555 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 ECM1Q16610 540 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 PGBD3Q8N328 593 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 PRPF38AQ8NAV1 312 aaKnown RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 AVENQ9NQS1 362 aaPredicted RBP6.43□□□□□ -1.38
CCDC39-205ENST00000485055 LEMD3Q9Y2U8 911 aa6.43□□□□□ -1.38
CCDC39-205ENST00000485055 IRS4O14654 1257 aaPredicted RBP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 RPS8P62241 208 aaKnown RBP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 DSG2Q14126 1118 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 TWISTNBQ3B726 338 aaPredicted RBP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 RNF34Q969K3 372 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 MRIQ9BWK5 157 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 CFHR5Q9BXR6 569 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 FAM126AQ9BYI3 521 aaPredicted RBP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 MUC3BQ9H195 1237 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 RSPH9Q9H1X1 276 aaPredicted RBP6.42□□□□□ -1.38
CCDC39-205ENST00000485055 ZHX3Q9H4I2 956 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 PPCSQ9HAB8 311 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 PCDHB15Q9Y5E8 787 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 MYH13Q9UKX3 1938 aa6.42□□□□□ -1.38
CCDC39-205ENST00000485055 XDHP47989 1333 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms