RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CLEC11AQ9Y240 323 aa14.63□□□□□ -0.07
SDC1-206ENST00000482879 FLT1P17948 1338 aa14.63□□□□□ -0.07
SDC1-206ENST00000482879 FOXP2O15409 715 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 ENTPD3O75355 529 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 NPM3O75607 178 aaKnown RBP14.62□□□□□ -0.07
SDC1-206ENST00000482879 SEC24BO95487 1268 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 YY1P25490 414 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 TDO2P48775 406 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 TNNI2P48788 182 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 TNFAIP1Q13829 316 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 ALX1Q15699 326 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 GIMAP6Q6P9H5 292 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 APOBEC3FQ8IUX4 373 aaKnown RBP14.62□□□□□ -0.07
SDC1-206ENST00000482879 DCPSQ96C86 337 aaKnown RBP14.62□□□□□ -0.07
SDC1-206ENST00000482879 NAPBQ9H115 298 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 GPBP1L1Q9HC44 474 aaPredicted RBP14.62□□□□□ -0.07
SDC1-206ENST00000482879 EPB41L4AQ9HCS5 686 aaPredicted RBP14.62□□□□□ -0.07
SDC1-206ENST00000482879 MCM9Q9NXL9 1143 aa14.62□□□□□ -0.07
SDC1-206ENST00000482879 SAP30BPQ9UHR5 308 aaKnown RBP14.62□□□□□ -0.07
SDC1-206ENST00000482879 SCAF8Q9UPN6 1271 aaKnown RBP14.62□□□□□ -0.07
SDC1-206ENST00000482879 FGAP02671 866 aa14.61□□□□□ -0.07
SDC1-206ENST00000482879 FAM83AQ86UY5 434 aa14.61□□□□□ -0.07
SDC1-206ENST00000482879 ZFPM1Q8IX07 1006 aa14.61□□□□□ -0.07
SDC1-206ENST00000482879 FAM151AQ8WW52 585 aa14.61□□□□□ -0.07
SDC1-206ENST00000482879 MAP4K1Q92918 833 aa14.61□□□□□ -0.07
SDC1-206ENST00000482879 BACH2Q9BYV9 841 aa14.61□□□□□ -0.07
SDC1-206ENST00000482879 OSBPL5Q9H0X9 879 aaPredicted RBP14.61□□□□□ -0.07
SDC1-206ENST00000482879 MKRN1Q9UHC7 482 aaKnown RBP14.61□□□□□ -0.07
SDC1-206ENST00000482879 PGAP2Q9UHJ9 254 aa14.61□□□□□ -0.07
SDC1-206ENST00000482879 U3KPZ7 1027 aaPredicted RBP14.61□□□□□ -0.07
SDC1-206ENST00000482879 PITPNM2Q9BZ72 1349 aa14.61□□□□□ -0.07
SDC1-206ENST00000482879 USP17L12C9JPN9 530 aa14.6□□□□□ -0.07
SDC1-206ENST00000482879 USP17L21D6R901 530 aa14.6□□□□□ -0.07
SDC1-206ENST00000482879 POLR3DP05423 398 aaPredicted RBP14.6□□□□□ -0.07
SDC1-206ENST00000482879 POTEIP0CG38 1075 aa14.6□□□□□ -0.07
SDC1-206ENST00000482879 POTEJP0CG39 1038 aa14.6□□□□□ -0.07
SDC1-206ENST00000482879 RASA3Q14644 834 aa14.6□□□□□ -0.07
SDC1-206ENST00000482879 ZSCAN29Q8IWY8 852 aaPredicted RBP14.6□□□□□ -0.07
SDC1-206ENST00000482879 CTNNA3Q9UI47 895 aa14.6□□□□□ -0.07
SDC1-206ENST00000482879 PALD1Q9ULE6 856 aa14.6□□□□□ -0.07
SDC1-206ENST00000482879 RBM8AQ9Y5S9 174 aaKnown RBP14.6□□□□□ -0.07
SDC1-206ENST00000482879 CNTNAP1P78357 1384 aa14.6□□□□□ -0.07
SDC1-206ENST00000482879 MINDY4BA8MYZ0 360 aa14.59□□□□□ -0.07
SDC1-206ENST00000482879 SLC4A8Q2Y0W8 1093 aa14.59□□□□□ -0.07
SDC1-206ENST00000482879 CTR9Q6PD62 1173 aa14.59□□□□□ -0.07
SDC1-206ENST00000482879 KRT26Q7Z3Y9 468 aa14.59□□□□□ -0.07
SDC1-206ENST00000482879 LDHDQ86WU2 507 aa14.59□□□□□ -0.07
SDC1-206ENST00000482879 SULF1Q8IWU6 871 aa14.59□□□□□ -0.07
SDC1-206ENST00000482879 AMOTL1Q8IY63 956 aa14.59□□□□□ -0.07
SDC1-206ENST00000482879 USP26Q9BXU7 913 aa14.59□□□□□ -0.07
SDC1-206ENST00000482879 TMEM39BQ9GZU3 492 aa14.59□□□□□ -0.07
SDC1-206ENST00000482879 DEFB129Q9H1M3 183 aa14.59□□□□□ -0.07
SDC1-206ENST00000482879 CYP2D7A0A087X1C5 515 aa14.58□□□□□ -0.08
SDC1-206ENST00000482879 DDTLA6NHG4 134 aaPredicted RBP14.58□□□□□ -0.08
SDC1-206ENST00000482879 EPB41L2O43491 1005 aaKnown RBP14.58□□□□□ -0.08
SDC1-206ENST00000482879 CYP2D6P10635 497 aa14.58□□□□□ -0.08
SDC1-206ENST00000482879 SBK1Q52WX2 424 aa14.58□□□□□ -0.08
SDC1-206ENST00000482879 SH3BP5LQ7L8J4 393 aa14.58□□□□□ -0.08
SDC1-206ENST00000482879 TTC6Q86TZ1 520 aa14.58□□□□□ -0.08
SDC1-206ENST00000482879 USP48Q86UV5 1035 aa14.58□□□□□ -0.08
SDC1-206ENST00000482879 DHX36Q9H2U1 1008 aaKnown RBP14.58□□□□□ -0.08
SDC1-206ENST00000482879 ARPP21Q9UBL0 812 aaPredicted RBP14.58□□□□□ -0.08
SDC1-206ENST00000482879 ZMYM6O95789 1325 aa14.58□□□□□ -0.08
SDC1-206ENST00000482879 DDX60LQ5H9U9 1706 aaKnown RBP14.58□□□□□ -0.08
SDC1-206ENST00000482879 LAMB1P07942 1786 aa14.57□□□□□ -0.08
SDC1-206ENST00000482879 HLA-DOAP06340 250 aa14.57□□□□□ -0.08
SDC1-206ENST00000482879 PLCD1P51178 756 aa14.57□□□□□ -0.08
SDC1-206ENST00000482879 HAND2P61296 217 aa14.57□□□□□ -0.08
SDC1-206ENST00000482879 IMMTQ16891 758 aaKnown RBP14.57□□□□□ -0.08
SDC1-206ENST00000482879 C12orf60Q5U649 245 aa14.57□□□□□ -0.08
SDC1-206ENST00000482879 MAP1SQ66K74 1059 aaPredicted RBP14.57□□□□□ -0.08
SDC1-206ENST00000482879 PPP2R3BQ9Y5P8 575 aa14.57□□□□□ -0.08
SDC1-206ENST00000482879 LAMA4Q16363 1823 aa14.57□□□□□ -0.08
SDC1-206ENST00000482879 COL2A1P02458 1487 aaPredicted RBP14.57□□□□□ -0.08
SDC1-206ENST00000482879 ADM5C9JUS6 153 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 ZNF213O14771 459 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 PPARAQ07869 468 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 NECTIN1Q15223 517 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 PRAMEF18Q5VWM3 479 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 CDC37L1Q7L3B6 337 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 TEPSINQ96N21 525 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 CSRNP1Q96S65 589 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 GLIS2Q9BZE0 524 aaPredicted RBP14.56□□□□□ -0.08
SDC1-206ENST00000482879 PI4KBQ9UBF8 816 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 MYH8P13535 1937 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 ATRNL1Q5VV63 1379 aa14.56□□□□□ -0.08
SDC1-206ENST00000482879 SMIM22K7EJ46 135 aa14.55□□□□□ -0.08
SDC1-206ENST00000482879 KIF3CO14782 793 aa14.55□□□□□ -0.08
SDC1-206ENST00000482879 SLC27A2O14975 620 aa14.55□□□□□ -0.08
SDC1-206ENST00000482879 SLC3A2P08195 630 aaKnown RBP14.55□□□□□ -0.08
SDC1-206ENST00000482879 MCCP23508 829 aa14.55□□□□□ -0.08
SDC1-206ENST00000482879 EVX2Q03828 476 aa14.55□□□□□ -0.08
SDC1-206ENST00000482879 CTDSPL2Q05D32 466 aa14.55□□□□□ -0.08
SDC1-206ENST00000482879 NBPF12Q5TAG4 269 aaPredicted RBP14.55□□□□□ -0.08
SDC1-206ENST00000482879 RNF20Q5VTR2 975 aa14.55□□□□□ -0.08
SDC1-206ENST00000482879 CREB3L3Q68CJ9 461 aa14.55□□□□□ -0.08
SDC1-206ENST00000482879 CHADLQ6NUI6 762 aa14.55□□□□□ -0.08
SDC1-206ENST00000482879 FOXP4Q8IVH2 680 aaPredicted RBP14.55□□□□□ -0.08
SDC1-206ENST00000482879 CDAN1Q8IWY9 1227 aa14.55□□□□□ -0.08
SDC1-206ENST00000482879 STK11IPQ8N1F8 1099 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms