RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 FAM43AQ8N2R8 423 aa18.29■□□□□ 0.52
LIMS3-204ENST00000482065 EAF2Q96CJ1 260 aaPredicted RBP18.29■□□□□ 0.52
LIMS3-204ENST00000482065 LRP2BPQ9P2M1 347 aa18.29■□□□□ 0.52
LIMS3-204ENST00000482065 ZNF112Q9UJU3 913 aa18.29■□□□□ 0.52
LIMS3-204ENST00000482065 DDTLA6NHG4 134 aaPredicted RBP18.28■□□□□ 0.52
LIMS3-204ENST00000482065 GSTO1P78417 241 aa18.28■□□□□ 0.52
LIMS3-204ENST00000482065 PPIL2Q13356 520 aa18.28■□□□□ 0.52
LIMS3-204ENST00000482065 HPS5Q9UPZ3 1129 aa18.28■□□□□ 0.52
LIMS3-204ENST00000482065 CYP2E1P05181 493 aaPredicted RBP18.27■□□□□ 0.52
LIMS3-204ENST00000482065 LDHCP07864 332 aa18.27■□□□□ 0.52
LIMS3-204ENST00000482065 PKN2Q16513 984 aaKnown RBP18.27■□□□□ 0.52
LIMS3-204ENST00000482065 MAST2Q6P0Q8 1798 aa18.27■□□□□ 0.51
LIMS3-204ENST00000482065 MYO5AQ9Y4I1 1855 aaKnown RBP18.26■□□□□ 0.51
LIMS3-204ENST00000482065 CETPP11597 493 aa18.26■□□□□ 0.51
LIMS3-204ENST00000482065 ZAP70P43403 619 aa18.26■□□□□ 0.51
LIMS3-204ENST00000482065 PPATQ06203 517 aa18.26■□□□□ 0.51
LIMS3-204ENST00000482065 SNAPC2Q13487 334 aa18.26■□□□□ 0.51
LIMS3-204ENST00000482065 TAF1CQ15572 869 aaPredicted RBP18.26■□□□□ 0.51
LIMS3-204ENST00000482065 NOL9Q5SY16 702 aaKnown RBP18.26■□□□□ 0.51
LIMS3-204ENST00000482065 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.26■□□□□ 0.51
LIMS3-204ENST00000482065 DDX19BQ9UMR2 479 aa18.26■□□□□ 0.51
LIMS3-204ENST00000482065 PHF20L1A8MW92 1017 aa18.25■□□□□ 0.51
LIMS3-204ENST00000482065 BTBD19C9JJ37 291 aa18.25■□□□□ 0.51
LIMS3-204ENST00000482065 NAA16Q6N069 864 aaPredicted RBP18.25■□□□□ 0.51
LIMS3-204ENST00000482065 CD99L2Q8TCZ2 262 aa18.25■□□□□ 0.51
LIMS3-204ENST00000482065 ZNF512BQ96KM6 892 aaPredicted RBP18.25■□□□□ 0.51
LIMS3-204ENST00000482065 PIH1D3Q9NQM4 214 aaKnown RBP18.25■□□□□ 0.51
LIMS3-204ENST00000482065 ZBTB40Q9NUA8 1239 aa18.25■□□□□ 0.51
LIMS3-204ENST00000482065 TRIM17Q9Y577 477 aa18.25■□□□□ 0.51
LIMS3-204ENST00000482065 SOX10P56693 466 aa18.24■□□□□ 0.51
LIMS3-204ENST00000482065 CAP1Q01518 475 aa18.24■□□□□ 0.51
LIMS3-204ENST00000482065 C20orf194Q5TEA3 1177 aa18.24■□□□□ 0.51
LIMS3-204ENST00000482065 FBXO46Q6PJ61 603 aaPredicted RBP18.24■□□□□ 0.51
LIMS3-204ENST00000482065 AACSQ86V21 672 aa18.24■□□□□ 0.51
LIMS3-204ENST00000482065 ERC1Q8IUD2 1116 aa18.24■□□□□ 0.51
LIMS3-204ENST00000482065 SIRT2Q8IXJ6 389 aa18.24■□□□□ 0.51
LIMS3-204ENST00000482065 TEX11Q8IYF3 940 aa18.24■□□□□ 0.51
LIMS3-204ENST00000482065 ZFYVE28Q9HCC9 887 aa18.24■□□□□ 0.51
LIMS3-204ENST00000482065 IL1RAPL2Q9NP60 686 aa18.24■□□□□ 0.51
LIMS3-204ENST00000482065 AATFQ9NY61 560 aaKnown RBP eCLIP18.24■□□□□ 0.51
LIMS3-204ENST00000482065 APBB1O00213 710 aa18.23■□□□□ 0.51
LIMS3-204ENST00000482065 RGS19P49795 217 aa18.23■□□□□ 0.51
LIMS3-204ENST00000482065 SP3Q02447 781 aa18.23■□□□□ 0.51
LIMS3-204ENST00000482065 MAP3K10Q02779 954 aa18.23■□□□□ 0.51
LIMS3-204ENST00000482065 OTOP1Q7RTM1 612 aa18.23■□□□□ 0.51
LIMS3-204ENST00000482065 ADGRA1Q86SQ6 560 aa18.23■□□□□ 0.51
LIMS3-204ENST00000482065 SH3RF3Q8TEJ3 882 aaPredicted RBP18.23■□□□□ 0.51
LIMS3-204ENST00000482065 ERO1AQ96HE7 468 aa18.23■□□□□ 0.51
LIMS3-204ENST00000482065 KCNH4Q9UQ05 1017 aa18.23■□□□□ 0.51
LIMS3-204ENST00000482065 NDUFB9Q9Y6M9 179 aa18.23■□□□□ 0.51
LIMS3-204ENST00000482065 HTTP42858 3142 aa18.22■□□□□ 0.51
LIMS3-204ENST00000482065 FAM196BA6NMK8 535 aa18.22■□□□□ 0.51
LIMS3-204ENST00000482065 NPM3O75607 178 aaKnown RBP18.22■□□□□ 0.51
LIMS3-204ENST00000482065 MAP4K4O95819 1239 aaPredicted RBP18.22■□□□□ 0.51
LIMS3-204ENST00000482065 RPAP2Q8IXW5 612 aaPredicted RBP18.22■□□□□ 0.51
LIMS3-204ENST00000482065 SCYL3Q8IZE3 742 aa18.22■□□□□ 0.51
LIMS3-204ENST00000482065 RHPN1Q8TCX5 695 aa18.22■□□□□ 0.51
LIMS3-204ENST00000482065 NOL10Q9BSC4 688 aaKnown RBP18.22■□□□□ 0.51
LIMS3-204ENST00000482065 OSBPL5Q9H0X9 879 aaPredicted RBP18.22■□□□□ 0.51
LIMS3-204ENST00000482065 HSP90AB4PQ58FF6 505 aa18.21■□□□□ 0.51
LIMS3-204ENST00000482065 PICK1Q9NRD5 415 aa18.21■□□□□ 0.51
LIMS3-204ENST00000482065 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.21■□□□□ 0.51
LIMS3-204ENST00000482065 DOCK1Q14185 1865 aa18.2■□□□□ 0.5
LIMS3-204ENST00000482065 HMMRO75330 724 aa18.2■□□□□ 0.5
LIMS3-204ENST00000482065 IDH1O75874 414 aaKnown RBP18.2■□□□□ 0.5
LIMS3-204ENST00000482065 BAG3O95817 575 aa18.2■□□□□ 0.5
LIMS3-204ENST00000482065 PTPRAP18433 802 aa18.2■□□□□ 0.5
LIMS3-204ENST00000482065 MLLT1Q03111 559 aaPredicted RBP18.2■□□□□ 0.5
LIMS3-204ENST00000482065 MOGSQ13724 837 aa18.2■□□□□ 0.5
LIMS3-204ENST00000482065 BCL11AQ9H165 835 aa18.2■□□□□ 0.5
LIMS3-204ENST00000482065 ANTXR1Q9H6X2 564 aa18.2■□□□□ 0.5
LIMS3-204ENST00000482065 EFCC1Q9HA90 598 aa18.2■□□□□ 0.5
LIMS3-204ENST00000482065 ZCCHC17Q9NP64 241 aaKnown RBP18.2■□□□□ 0.5
LIMS3-204ENST00000482065 ZHX2Q9Y6X8 837 aa18.2■□□□□ 0.5
LIMS3-204ENST00000482065 COL2A1P02458 1487 aaPredicted RBP18.2■□□□□ 0.5
LIMS3-204ENST00000482065 TLR2O60603 784 aa18.19■□□□□ 0.5
LIMS3-204ENST00000482065 PPP4CP60510 307 aa18.19■□□□□ 0.5
LIMS3-204ENST00000482065 DYNLL1P63167 89 aaKnown RBP18.19■□□□□ 0.5
LIMS3-204ENST00000482065 ANKRD23Q86SG2 305 aa18.19■□□□□ 0.5
LIMS3-204ENST00000482065 CCDC84Q86UT8 332 aaPredicted RBP18.19■□□□□ 0.5
LIMS3-204ENST00000482065 TGFBRAP1Q8WUH2 860 aa18.19■□□□□ 0.5
LIMS3-204ENST00000482065 KIF1BPQ96EK5 621 aa18.19■□□□□ 0.5
LIMS3-204ENST00000482065 CDK5RAP2Q96SN8 1893 aa18.19■□□□□ 0.5
LIMS3-204ENST00000482065 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.19■□□□□ 0.5
LIMS3-204ENST00000482065 PDHXO00330 501 aa18.18■□□□□ 0.5
LIMS3-204ENST00000482065 CXCL11O14625 94 aa18.18■□□□□ 0.5
LIMS3-204ENST00000482065 TBC1D12O60347 775 aa18.18■□□□□ 0.5
LIMS3-204ENST00000482065 CTNND1O60716 968 aaKnown RBP18.18■□□□□ 0.5
LIMS3-204ENST00000482065 PLCG2P16885 1265 aa18.18■□□□□ 0.5
LIMS3-204ENST00000482065 CYP7A1P22680 504 aa18.18■□□□□ 0.5
LIMS3-204ENST00000482065 PDE3AQ14432 1141 aa18.18■□□□□ 0.5
LIMS3-204ENST00000482065 MAPKAPK5Q8IW41 473 aa18.18■□□□□ 0.5
LIMS3-204ENST00000482065 CHMP4BQ9H444 224 aaKnown RBP18.18■□□□□ 0.5
LIMS3-204ENST00000482065 ZSWIM8A7E2V4 1837 aa18.18■□□□□ 0.5
LIMS3-204ENST00000482065 PHIPQ8WWQ0 1821 aa18.18■□□□□ 0.5
LIMS3-204ENST00000482065 SIPA1L1O43166 1804 aa18.17■□□□□ 0.5
LIMS3-204ENST00000482065 RRP1BQ14684 758 aaKnown RBP18.17■□□□□ 0.5
LIMS3-204ENST00000482065 GPAT2Q6NUI2 795 aa18.17■□□□□ 0.5
LIMS3-204ENST00000482065 CLASRPQ8N2M8 674 aaKnown RBP18.17■□□□□ 0.5
LIMS3-204ENST00000482065 MAGEB6Q8N7X4 407 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms