RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 PTPRAP18433 802 aa9.7□□□□□ -0.86
USP54-213ENST00000481991 CDC42EP5Q6NZY7 148 aa9.7□□□□□ -0.86
USP54-213ENST00000481991 SLC4A10Q6U841 1118 aa9.7□□□□□ -0.86
USP54-213ENST00000481991 PRRT2Q7Z6L0 340 aaPredicted RBP9.7□□□□□ -0.86
USP54-213ENST00000481991 FBXO33Q7Z6M2 555 aa9.7□□□□□ -0.86
USP54-213ENST00000481991 CCAR1Q8IX12 1150 aaKnown RBP9.7□□□□□ -0.86
USP54-213ENST00000481991 MRIQ9BWK5 157 aa9.7□□□□□ -0.86
USP54-213ENST00000481991 MAST3O60307 1309 aa9.7□□□□□ -0.86
USP54-213ENST00000481991 LAMB1P07942 1786 aa9.69□□□□□ -0.86
USP54-213ENST00000481991 CACNB1Q02641 598 aaPredicted RBP9.69□□□□□ -0.86
USP54-213ENST00000481991 NFIAQ12857 509 aa9.69□□□□□ -0.86
USP54-213ENST00000481991 LRRC26Q2I0M4 334 aa9.69□□□□□ -0.86
USP54-213ENST00000481991 NOL9Q5SY16 702 aaKnown RBP9.69□□□□□ -0.86
USP54-213ENST00000481991 FAM109BQ6ICB4 259 aaPredicted RBP9.69□□□□□ -0.86
USP54-213ENST00000481991 HHIPL2Q6UWX4 724 aa9.69□□□□□ -0.86
USP54-213ENST00000481991 CCDC84Q86UT8 332 aaPredicted RBP9.69□□□□□ -0.86
USP54-213ENST00000481991 ZFPM1Q8IX07 1006 aa9.69□□□□□ -0.86
USP54-213ENST00000481991 SCYL3Q8IZE3 742 aa9.69□□□□□ -0.86
USP54-213ENST00000481991 MYLIPQ8WY64 445 aa9.69□□□□□ -0.86
USP54-213ENST00000481991 SENP6Q9GZR1 1112 aaPredicted RBP9.69□□□□□ -0.86
USP54-213ENST00000481991 SEMA6BQ9H3T3 888 aa9.69□□□□□ -0.86
USP54-213ENST00000481991 CWC22Q9HCG8 908 aaKnown RBP9.69□□□□□ -0.86
USP54-213ENST00000481991 PNMA3Q9UL41 463 aa9.69□□□□□ -0.86
USP54-213ENST00000481991 AFG3L2Q9Y4W6 797 aa9.69□□□□□ -0.86
USP54-213ENST00000481991 MROH5Q6ZUA9 1318 aa9.68□□□□□ -0.86
USP54-213ENST00000481991 MYBBP1AQ9BQG0 1328 aaKnown RBP9.68□□□□□ -0.86
USP54-213ENST00000481991 TMEM265A0A087WTH1 108 aa9.68□□□□□ -0.86
USP54-213ENST00000481991 MYCNP04198 464 aaPredicted RBP9.68□□□□□ -0.86
USP54-213ENST00000481991 FOSL2P15408 326 aa9.68□□□□□ -0.86
USP54-213ENST00000481991 ATN1P54259 1190 aaPredicted RBP9.68□□□□□ -0.86
USP54-213ENST00000481991 DIXDC1Q155Q3 683 aa9.68□□□□□ -0.86
USP54-213ENST00000481991 PPM1EQ8WY54 764 aa9.68□□□□□ -0.86
USP54-213ENST00000481991 OGDHLQ9ULD0 1010 aa9.68□□□□□ -0.86
USP54-213ENST00000481991 GRM8O00222 908 aa9.67□□□□□ -0.86
USP54-213ENST00000481991 IFIT1P09914 478 aaKnown RBP9.67□□□□□ -0.86
USP54-213ENST00000481991 PRKAR2AP13861 404 aaKnown RBP9.67□□□□□ -0.86
USP54-213ENST00000481991 CNGA1P29973 690 aa9.67□□□□□ -0.86
USP54-213ENST00000481991 PICALMQ13492 652 aa9.67□□□□□ -0.86
USP54-213ENST00000481991 LRRC24Q50LG9 513 aa9.67□□□□□ -0.86
USP54-213ENST00000481991 TREML2Q5T2D2 321 aa9.67□□□□□ -0.86
USP54-213ENST00000481991 WDR66Q8TBY9 1149 aa9.67□□□□□ -0.86
USP54-213ENST00000481991 FAM122AQ96E09 287 aa9.67□□□□□ -0.86
USP54-213ENST00000481991 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.67□□□□□ -0.86
USP54-213ENST00000481991 AGTPBP1Q9UPW5 1226 aa9.67□□□□□ -0.86
USP54-213ENST00000481991 SLC45A1Q9Y2W3 748 aa9.67□□□□□ -0.86
USP54-213ENST00000481991 PFASO15067 1338 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 PHF20L1A8MW92 1017 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 TNFRSF10AO00220 468 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 LDHBP07195 334 aaKnown RBP9.66□□□□□ -0.86
USP54-213ENST00000481991 SLURP2P0DP57 97 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 GCLCP48506 637 aaPredicted RBP9.66□□□□□ -0.86
USP54-213ENST00000481991 SPP2Q13103 211 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 DDX10Q13206 875 aaKnown RBP9.66□□□□□ -0.86
USP54-213ENST00000481991 PABPC4Q13310 644 aaKnown RBP eCLIP9.66□□□□□ -0.86
USP54-213ENST00000481991 SHHQ15465 462 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 FAM110CQ1W6H9 321 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 BEND3Q5T5X7 828 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 TRIB2Q92519 343 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 NUDT12Q9BQG2 462 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 PRDM5Q9NQX1 630 aaPredicted RBP9.66□□□□□ -0.86
USP54-213ENST00000481991 FAM198AQ9UFP1 575 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 GJD2Q9UKL4 321 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 SUGT1Q9Y2Z0 365 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 DAGLAQ9Y4D2 1042 aa9.66□□□□□ -0.86
USP54-213ENST00000481991 LAMA3Q16787 3333 aa9.65□□□□□ -0.86
USP54-213ENST00000481991 CTNND1O60716 968 aaKnown RBP9.65□□□□□ -0.86
USP54-213ENST00000481991 PDE8BO95263 885 aa9.65□□□□□ -0.86
USP54-213ENST00000481991 ZKSCAN1P17029 563 aaPredicted RBP9.65□□□□□ -0.86
USP54-213ENST00000481991 CCND3P30281 292 aaPredicted RBP9.65□□□□□ -0.86
USP54-213ENST00000481991 RGS3P49796 1198 aa9.65□□□□□ -0.86
USP54-213ENST00000481991 CACNB2Q08289 660 aaPredicted RBP9.65□□□□□ -0.86
USP54-213ENST00000481991 PDE3AQ14432 1141 aa9.65□□□□□ -0.86
USP54-213ENST00000481991 NCBP3Q53F19 620 aaKnown RBP9.65□□□□□ -0.86
USP54-213ENST00000481991 SUCLG2Q96I99 432 aa9.65□□□□□ -0.86
USP54-213ENST00000481991 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.65□□□□□ -0.86
USP54-213ENST00000481991 ATP11BQ9Y2G3 1177 aa9.65□□□□□ -0.86
USP54-213ENST00000481991 SALL2Q9Y467 1007 aaPredicted RBP9.65□□□□□ -0.86
USP54-213ENST00000481991 MGAMO43451 1857 aa9.65□□□□□ -0.86
USP54-213ENST00000481991 PEX10O60683 326 aa9.64□□□□□ -0.87
USP54-213ENST00000481991 HMGCS2P54868 508 aa9.64□□□□□ -0.87
USP54-213ENST00000481991 IRX3P78415 501 aaPredicted RBP9.64□□□□□ -0.87
USP54-213ENST00000481991 WDR78Q5VTH9 848 aa9.64□□□□□ -0.87
USP54-213ENST00000481991 KLHDC4Q8TBB5 520 aa9.64□□□□□ -0.87
USP54-213ENST00000481991 ASCC2Q9H1I8 757 aaPredicted RBP9.64□□□□□ -0.87
USP54-213ENST00000481991 ARAP2Q8WZ64 1704 aa9.64□□□□□ -0.87
USP54-213ENST00000481991 ALPK3Q96L96 1907 aa9.64□□□□□ -0.87
USP54-213ENST00000481991 DDTLA6NHG4 134 aaPredicted RBP9.63□□□□□ -0.87
USP54-213ENST00000481991 FAM196BA6NMK8 535 aa9.63□□□□□ -0.87
USP54-213ENST00000481991 SLC5A1P13866 664 aa9.63□□□□□ -0.87
USP54-213ENST00000481991 PRDX5P30044 214 aa9.63□□□□□ -0.87
USP54-213ENST00000481991 TJAP1Q5JTD0 557 aa9.63□□□□□ -0.87
USP54-213ENST00000481991 GPRC5AQ8NFJ5 357 aa9.63□□□□□ -0.87
USP54-213ENST00000481991 SRCIN1Q9C0H9 1055 aa9.63□□□□□ -0.87
USP54-213ENST00000481991 GNL3LQ9NVN8 582 aaKnown RBP9.63□□□□□ -0.87
USP54-213ENST00000481991 TMOD4Q9NZQ9 345 aa9.63□□□□□ -0.87
USP54-213ENST00000481991 NDUFB9Q9Y6M9 179 aa9.63□□□□□ -0.87
USP54-213ENST00000481991 UNC80Q8N2C7 3258 aa9.63□□□□□ -0.87
USP54-213ENST00000481991 DOCK3Q8IZD9 2030 aa9.63□□□□□ -0.87
USP54-213ENST00000481991 RPAP1Q9BWH6 1393 aaPredicted RBP9.63□□□□□ -0.87
USP54-213ENST00000481991 PUM3Q15397 648 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms