RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ST5P78524 1137 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 MAP3K12Q12852 859 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 RESTQ13127 1097 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 CTCFLQ8NI51 663 aaPredicted RBP15.31■□□□□ 0.04
USP42-206ENST00000479544 IQGAP1P46940 1657 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 KANK3Q6NY19 840 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 RPAP1Q9BWH6 1393 aaPredicted RBP15.31■□□□□ 0.04
USP42-206ENST00000479544 PSDA5PKW4 1024 aaPredicted RBP15.31■□□□□ 0.04
USP42-206ENST00000479544 MRPS25P82663 173 aaKnown RBP15.31■□□□□ 0.04
USP42-206ENST00000479544 VAT1LQ9HCJ6 419 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 ADAM21Q9UKJ8 722 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 RCOR1Q9UKL0 485 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 CTNND2Q9UQB3 1225 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 GOLGA6CA6NDK9 693 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 SLFN14P0C7P3 912 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 GOLGA6DP0CG33 693 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 KIF5AQ12840 1032 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 LUC7LQ9NQ29 371 aaKnown RBP15.31■□□□□ 0.04
USP42-206ENST00000479544 GOLGA6AQ9NYA3 693 aa15.31■□□□□ 0.04
USP42-206ENST00000479544 TRMT112Q9UI30 125 aaKnown RBP15.31■□□□□ 0.04
USP42-206ENST00000479544 DBNLQ9UJU6 430 aaKnown RBP15.31■□□□□ 0.04
USP42-206ENST00000479544 TMEM232C9JQI7 657 aa15.3■□□□□ 0.04
USP42-206ENST00000479544 SNRPA1P09661 255 aaKnown RBP15.3■□□□□ 0.04
USP42-206ENST00000479544 PDIA3P30101 505 aaKnown RBP15.3■□□□□ 0.04
USP42-206ENST00000479544 SND1Q7KZF4 910 aaKnown RBP eCLIP15.3■□□□□ 0.04
USP42-206ENST00000479544 KRT28Q7Z3Y7 464 aa15.3■□□□□ 0.04
USP42-206ENST00000479544 IRX2Q9BZI1 471 aaPredicted RBP15.3■□□□□ 0.04
USP42-206ENST00000479544 BLZF1Q9H2G9 400 aa15.3■□□□□ 0.04
USP42-206ENST00000479544 DDX21Q9NR30 783 aaKnown RBP eCLIP15.3■□□□□ 0.04
USP42-206ENST00000479544 ZPR1O75312 459 aa15.3■□□□□ 0.04
USP42-206ENST00000479544 CCDC42Q96M95 316 aa15.3■□□□□ 0.04
USP42-206ENST00000479544 MCM7P33993 719 aa15.3■□□□□ 0.04
USP42-206ENST00000479544 NBPF6Q5VWK0 638 aa15.3■□□□□ 0.04
USP42-206ENST00000479544 ATL3Q6DD88 541 aa15.3■□□□□ 0.04
USP42-206ENST00000479544 SMYD4Q8IYR2 804 aaPredicted RBP15.3■□□□□ 0.04
USP42-206ENST00000479544 DYDC1Q8WWB3 177 aa15.3■□□□□ 0.04
USP42-206ENST00000479544 NBPF4Q96M43 638 aa15.3■□□□□ 0.04
USP42-206ENST00000479544 CCDC194A0A1B0GVG4 234 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 SMIM23A6NLE4 172 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 TOB2Q14106 344 aaPredicted RBP15.29■□□□□ 0.04
USP42-206ENST00000479544 POSTNQ15063 836 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 CTAGE1Q96RT6 745 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 CROCC2H7BZ55 1655 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 KRT86O43790 486 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 PFKFB2O60825 505 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 IL15P40933 162 aaPredicted RBP15.29■□□□□ 0.04
USP42-206ENST00000479544 ATP1A2P50993 1020 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 SPTY2D1Q68D10 685 aaPredicted RBP15.29■□□□□ 0.04
USP42-206ENST00000479544 CNGA4Q8IV77 575 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 FAM204AQ9H8W3 233 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 METP08581 1390 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 HGSO14964 777 aaPredicted RBP15.29■□□□□ 0.04
USP42-206ENST00000479544 CYLC1P35663 651 aaPredicted RBP15.29■□□□□ 0.04
USP42-206ENST00000479544 IQCA1Q86XH1 822 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 GNL3LQ9NVN8 582 aaKnown RBP15.29■□□□□ 0.04
USP42-206ENST00000479544 INPP5BP32019 993 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 CCT5P48643 541 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 PPM1EQ8WY54 764 aa15.29■□□□□ 0.04
USP42-206ENST00000479544 DEPDC5O75140 1603 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 MED1Q15648 1581 aaPredicted RBP15.28■□□□□ 0.04
USP42-206ENST00000479544 BICDL1Q6ZP65 573 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 IFNL2Q8IZJ0 200 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 SBNO1A3KN83 1393 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 BTBD18B2RXH4 712 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 GPAA1O43292 621 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 SASH1O94885 1247 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 ERLIN2O94905 339 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 HSPD1P10809 573 aaKnown RBP15.28■□□□□ 0.04
USP42-206ENST00000479544 GBP2P32456 591 aaPredicted RBP15.28■□□□□ 0.04
USP42-206ENST00000479544 STAT6P42226 847 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 SYCP1Q15431 976 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 SLC35F6Q8N357 371 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 CDC5LQ99459 802 aaKnown RBP15.28■□□□□ 0.04
USP42-206ENST00000479544 SOWAHDA6NJG2 315 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 CTIFO43310 598 aaKnown RBP15.28■□□□□ 0.04
USP42-206ENST00000479544 PRDM1O75626 825 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 ACTN2P35609 894 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 GCKRQ14397 625 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 CATIPQ7Z7H3 387 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 FBXO18Q8NFZ0 1043 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 FAM89AQ96GI7 184 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 CCDC114Q96M63 670 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 ALS2CR12Q96Q35 445 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 UBA5Q9GZZ9 404 aa15.28■□□□□ 0.04
USP42-206ENST00000479544 UNC13BO14795 1591 aa15.27■□□□□ 0.04
USP42-206ENST00000479544 PLEKHG3A1L390 1219 aa15.27■□□□□ 0.04
USP42-206ENST00000479544 GCP02774 474 aa15.27■□□□□ 0.04
USP42-206ENST00000479544 CKAP4Q07065 602 aaKnown RBP15.27■□□□□ 0.04
USP42-206ENST00000479544 GBP6Q6ZN66 633 aa15.27■□□□□ 0.04
USP42-206ENST00000479544 MICALCLQ6ZW33 695 aa15.27■□□□□ 0.04
USP42-206ENST00000479544 GOLGA5Q8TBA6 731 aa15.27■□□□□ 0.04
USP42-206ENST00000479544 TLDC2A0PJX2 215 aa15.27■□□□□ 0.04
USP42-206ENST00000479544 NF2P35240 595 aa15.27■□□□□ 0.04
USP42-206ENST00000479544 SOGA3Q5TF21 947 aa15.27■□□□□ 0.04
USP42-206ENST00000479544 SAMSN1Q9NSI8 373 aaKnown RBP15.27■□□□□ 0.04
USP42-206ENST00000479544 ANGEL1Q9UNK9 670 aaKnown RBP15.27■□□□□ 0.04
USP42-206ENST00000479544 POLR1AO95602 1720 aaPredicted RBP15.27■□□□□ 0.04
USP42-206ENST00000479544 G3V3G9 751 aa15.27■□□□□ 0.03
USP42-206ENST00000479544 RNMTO43148 476 aaKnown RBP15.27■□□□□ 0.03
USP42-206ENST00000479544 DCAF8Q5TAQ9 597 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms