RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 SPATA31A3Q5VYP0 1347 aa16.1■□□□□ 0.17
NPHP4-208ENST00000478423 ALKQ9UM73 1620 aa16.1■□□□□ 0.17
NPHP4-208ENST00000478423 CYLC1P35663 651 aaPredicted RBP16.1■□□□□ 0.17
NPHP4-208ENST00000478423 GTF2IP78347 998 aa16.1■□□□□ 0.17
NPHP4-208ENST00000478423 PTPN12Q05209 780 aaKnown RBP16.1■□□□□ 0.17
NPHP4-208ENST00000478423 FAM182BQ5T319 152 aa16.1■□□□□ 0.17
NPHP4-208ENST00000478423 CCDC174Q6PII3 467 aa16.1■□□□□ 0.17
NPHP4-208ENST00000478423 TBC1D22AQ8WUA7 517 aa16.1■□□□□ 0.17
NPHP4-208ENST00000478423 CLSTN2Q9H4D0 955 aa16.1■□□□□ 0.17
NPHP4-208ENST00000478423 HS1BP3Q53T59 392 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 ZNF654Q8IZM8 581 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 GPR108Q9NPR9 543 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 GLI2P10070 1586 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 ZNF445P59923 1031 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 MAP9Q49MG5 647 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 MAST3O60307 1309 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 ZNF202O95125 648 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 MYCNP04198 464 aaPredicted RBP16.09■□□□□ 0.17
NPHP4-208ENST00000478423 TCP10Q12799 353 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 TTC38Q5R3I4 469 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 BICD1Q96G01 975 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 MTMR6Q9Y217 621 aa16.09■□□□□ 0.17
NPHP4-208ENST00000478423 SPHKAPQ2M3C7 1700 aa16.08■□□□□ 0.17
NPHP4-208ENST00000478423 CIAO1O76071 339 aa16.08■□□□□ 0.17
NPHP4-208ENST00000478423 CD2BP2O95400 341 aaKnown RBP16.08■□□□□ 0.17
NPHP4-208ENST00000478423 FCHSD1Q86WN1 690 aa16.08■□□□□ 0.17
NPHP4-208ENST00000478423 CHAMP1Q96JM3 812 aa16.08■□□□□ 0.17
NPHP4-208ENST00000478423 VPS54Q9P1Q0 977 aa16.08■□□□□ 0.17
NPHP4-208ENST00000478423 CUTAO60888 179 aa16.08■□□□□ 0.16
NPHP4-208ENST00000478423 SASH1O94885 1247 aa16.08■□□□□ 0.16
NPHP4-208ENST00000478423 CYP21A2P08686 494 aa16.08■□□□□ 0.16
NPHP4-208ENST00000478423 MYSM1Q5VVJ2 828 aa16.08■□□□□ 0.16
NPHP4-208ENST00000478423 NLRP10Q86W26 655 aa16.08■□□□□ 0.16
NPHP4-208ENST00000478423 LARGE2Q8N3Y3 721 aa16.08■□□□□ 0.16
NPHP4-208ENST00000478423 PRPF4BQ13523 1007 aaKnown RBP16.08■□□□□ 0.16
NPHP4-208ENST00000478423 ANTXR1Q9H6X2 564 aa16.08■□□□□ 0.16
NPHP4-208ENST00000478423 CPSF1Q10570 1443 aaKnown RBP16.08■□□□□ 0.16
NPHP4-208ENST00000478423 PLS1Q14651 629 aa16.08■□□□□ 0.16
NPHP4-208ENST00000478423 ZNF589Q86UQ0 364 aaPredicted RBP16.08■□□□□ 0.16
NPHP4-208ENST00000478423 SEC31BQ9NQW1 1179 aa16.08■□□□□ 0.16
NPHP4-208ENST00000478423 UBE3CQ15386 1083 aa16.07■□□□□ 0.16
NPHP4-208ENST00000478423 SEPT7Q16181 437 aaKnown RBP16.07■□□□□ 0.16
NPHP4-208ENST00000478423 PTCH1Q13635 1447 aa16.07■□□□□ 0.16
NPHP4-208ENST00000478423 SLC1A4P43007 532 aa16.07■□□□□ 0.16
NPHP4-208ENST00000478423 ZMYM1Q5SVZ6 1142 aa16.07■□□□□ 0.16
NPHP4-208ENST00000478423 PAXIP1Q6ZW49 1069 aaPredicted RBP16.07■□□□□ 0.16
NPHP4-208ENST00000478423 HS2ST1Q7LGA3 356 aa16.07■□□□□ 0.16
NPHP4-208ENST00000478423 CMTR1Q8N1G2 835 aaKnown RBP16.07■□□□□ 0.16
NPHP4-208ENST00000478423 BICDL2A1A5D9 508 aa16.07■□□□□ 0.16
NPHP4-208ENST00000478423 RNF216Q9NWF9 866 aaPredicted RBP16.07■□□□□ 0.16
NPHP4-208ENST00000478423 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.07■□□□□ 0.16
NPHP4-208ENST00000478423 PFKFB2O60825 505 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 PLCD1P51178 756 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 CBX1P83916 185 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 UBXN1Q04323 297 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 PI16Q6UXB8 463 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 EHBP1Q8NDI1 1231 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 CGNQ9P2M7 1197 aaKnown RBP16.06■□□□□ 0.16
NPHP4-208ENST00000478423 MAPK8IP1Q9UQF2 711 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 ARID5AQ03989 594 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 UBE4AQ14139 1066 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 HLTFQ14527 1009 aaKnown RBP eCLIP16.06■□□□□ 0.16
NPHP4-208ENST00000478423 USP28Q96RU2 1077 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 TTF2Q9UNY4 1162 aaKnown RBP16.06■□□□□ 0.16
NPHP4-208ENST00000478423 CCDC175P0C221 793 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 TXKP42681 527 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 PNPLA6Q8IY17 1366 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 KRT13P13646 458 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 ARID4AP29374 1257 aaPredicted RBP16.06■□□□□ 0.16
NPHP4-208ENST00000478423 ALDH1B1P30837 517 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 POLA2Q14181 598 aa16.06■□□□□ 0.16
NPHP4-208ENST00000478423 ZYXQ15942 572 aaKnown RBP16.06■□□□□ 0.16
NPHP4-208ENST00000478423 ARPP21Q9UBL0 812 aaPredicted RBP16.06■□□□□ 0.16
NPHP4-208ENST00000478423 TNKSO95271 1327 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 MCM3P25205 808 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 DRC1Q96MC2 740 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 GJA3Q9Y6H8 435 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 FAM13AO94988 1023 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 IGKV5-2P06315 115 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 SV2BQ7L1I2 683 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 CCDC42Q96M95 316 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 SH2D4AQ9H788 454 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 CBX8Q9HC52 389 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 PUF60Q9UHX1 559 aaKnown RBP16.05■□□□□ 0.16
NPHP4-208ENST00000478423 FANCBQ8NB91 859 aa16.05■□□□□ 0.16
NPHP4-208ENST00000478423 CTNNBL1Q8WYA6 563 aaPredicted RBP16.05■□□□□ 0.16
NPHP4-208ENST00000478423 DYNC1I1O14576 645 aa16.04■□□□□ 0.16
NPHP4-208ENST00000478423 CCNT1O60563 726 aaKnown RBP16.04■□□□□ 0.16
NPHP4-208ENST00000478423 NONOQ15233 471 aaKnown RBP eCLIP16.04■□□□□ 0.164e-8■■■■□ 26.3
NPHP4-208ENST00000478423 MSL1Q68DK7 614 aa16.04■□□□□ 0.16
NPHP4-208ENST00000478423 TCHPQ9BT92 498 aa16.04■□□□□ 0.16
NPHP4-208ENST00000478423 LUC7L2Q9Y383 392 aaKnown RBP16.04■□□□□ 0.16
NPHP4-208ENST00000478423 RGS12O14924 1447 aa16.04■□□□□ 0.16
NPHP4-208ENST00000478423 FAM196AQ6ZSG2 479 aa16.04■□□□□ 0.16
NPHP4-208ENST00000478423 MPHOSPH6Q99547 160 aaKnown RBP16.04■□□□□ 0.16
NPHP4-208ENST00000478423 NAA15Q9BXJ9 866 aaKnown RBP16.04■□□□□ 0.16
NPHP4-208ENST00000478423 GTPBP4Q9BZE4 634 aaKnown RBP16.04■□□□□ 0.16
NPHP4-208ENST00000478423 ZBTB21Q9ULJ3 1066 aa16.04■□□□□ 0.16
NPHP4-208ENST00000478423 MADDQ8WXG6 1647 aa16.04■□□□□ 0.16
NPHP4-208ENST00000478423 ADGRB3O60242 1522 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms