RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 SLU7O95391 586 aaKnown RBP16.65■□□□□ 0.26
HDAC6-220ENST00000477528 TMX1Q9H3N1 280 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 IMPACTQ9P2X3 320 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 IFT172Q9UG01 1749 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 CDR1P51861 262 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 TRAPPC3LQ5T215 181 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 PIGBQ92521 554 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 KIAA1468Q9P260 1216 aa16.65■□□□□ 0.26
HDAC6-220ENST00000477528 CCNL1Q9UK58 526 aaPredicted RBP16.65■□□□□ 0.26
HDAC6-220ENST00000477528 ZNF174Q15697 407 aa16.64■□□□□ 0.25
HDAC6-220ENST00000477528 C17orf53Q8N3J3 647 aaPredicted RBP16.64■□□□□ 0.25
HDAC6-220ENST00000477528 PCDHA7Q9UN72 937 aa16.64■□□□□ 0.25
HDAC6-220ENST00000477528 SYCP1Q15431 976 aa16.64■□□□□ 0.25
HDAC6-220ENST00000477528 CARMIL3Q8ND23 1372 aa16.64■□□□□ 0.25
HDAC6-220ENST00000477528 USO1O60763 962 aaKnown RBP16.64■□□□□ 0.25
HDAC6-220ENST00000477528 FANCCQ00597 558 aa16.64■□□□□ 0.25
HDAC6-220ENST00000477528 RRP36Q96EU6 259 aaKnown RBP16.64■□□□□ 0.25
HDAC6-220ENST00000477528 RTEL1Q9NZ71 1219 aa16.64■□□□□ 0.25
HDAC6-220ENST00000477528 VWA3AA6NCI4 1184 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 ERVV-1B6SEH8 477 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 ADD2P35612 726 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 BCAMP50895 628 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 DTHD1Q6ZMT9 781 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 CUL5Q93034 780 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 POLR2DO15514 142 aaKnown RBP16.63■□□□□ 0.25
HDAC6-220ENST00000477528 TOB2Q14106 344 aaPredicted RBP16.63■□□□□ 0.25
HDAC6-220ENST00000477528 ZNF654Q8IZM8 581 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 CNBD1Q8NA66 436 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 MLKLQ8NB16 471 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 SRRTQ9BXP5 876 aaKnown RBP16.63■□□□□ 0.25
HDAC6-220ENST00000477528 MYO6Q9UM54 1294 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 KCNJ14Q9UNX9 436 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 MRVI1Q9Y6F6 885 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 A0A1W2PQ27 194 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 A0A1W2PQ64 194 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 A0A1W2PQD8 194 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 PFKFB1P16118 471 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 CMA1P23946 247 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 GNA11P29992 359 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 STX17P56962 302 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 LOC102724428A0A0B4J2F2 783 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 PPP1R12BO60237 982 aaPredicted RBP16.63■□□□□ 0.25
HDAC6-220ENST00000477528 SIK1P57059 783 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 WDR66Q8TBY9 1149 aa16.63■□□□□ 0.25
HDAC6-220ENST00000477528 AATFQ9NY61 560 aaKnown RBP eCLIP16.63■□□□□ 0.252e-7■■■■■ 44.3
HDAC6-220ENST00000477528 POTEB2H3BUK9 544 aa16.62■□□□□ 0.25
HDAC6-220ENST00000477528 JAKMIP3Q5VZ66 844 aa16.62■□□□□ 0.25
HDAC6-220ENST00000477528 LEKR1Q6ZMV7 388 aa16.62■□□□□ 0.25
HDAC6-220ENST00000477528 NCOA3Q9Y6Q9 1424 aa16.62■□□□□ 0.25
HDAC6-220ENST00000477528 CCDC175P0C221 793 aa16.62■□□□□ 0.25
HDAC6-220ENST00000477528 MYRIPQ8NFW9 859 aa16.62■□□□□ 0.25
HDAC6-220ENST00000477528 RCOR1Q9UKL0 485 aa16.62■□□□□ 0.25
HDAC6-220ENST00000477528 RPS8P62241 208 aaKnown RBP16.62■□□□□ 0.25
HDAC6-220ENST00000477528 RABL6Q3YEC7 729 aaPredicted RBP16.62■□□□□ 0.25
HDAC6-220ENST00000477528 CHRNDQ07001 517 aa16.62■□□□□ 0.25
HDAC6-220ENST00000477528 RESTQ13127 1097 aa16.62■□□□□ 0.25
HDAC6-220ENST00000477528 NOSTRINQ8IVI9 506 aa16.62■□□□□ 0.25
HDAC6-220ENST00000477528 CRKLP46109 303 aaKnown RBP16.61■□□□□ 0.25
HDAC6-220ENST00000477528 FAM98CQ17RN3 349 aaKnown RBP16.61■□□□□ 0.25
HDAC6-220ENST00000477528 GTPBP4Q9BZE4 634 aaKnown RBP16.61■□□□□ 0.25
HDAC6-220ENST00000477528 PUS7LQ9H0K6 701 aaKnown RBP16.61■□□□□ 0.25
HDAC6-220ENST00000477528 TFCP2L1Q9NZI6 479 aa16.61■□□□□ 0.25
HDAC6-220ENST00000477528 AXDND1Q5T1B0 1012 aaPredicted RBP16.61■□□□□ 0.25
HDAC6-220ENST00000477528 ASIC1P78348 528 aa16.61■□□□□ 0.25
HDAC6-220ENST00000477528 PICALMQ13492 652 aa16.61■□□□□ 0.25
HDAC6-220ENST00000477528 SPECC1Q5M775 1068 aa16.61■□□□□ 0.25
HDAC6-220ENST00000477528 TTC38Q5R3I4 469 aa16.61■□□□□ 0.25
HDAC6-220ENST00000477528 TRIM21P19474 475 aaKnown RBP16.61■□□□□ 0.25
HDAC6-220ENST00000477528 MCM3P25205 808 aa16.61■□□□□ 0.25
HDAC6-220ENST00000477528 DDIT3P35638 169 aa16.61■□□□□ 0.25
HDAC6-220ENST00000477528 PI16Q6UXB8 463 aa16.61■□□□□ 0.25
HDAC6-220ENST00000477528 TTLL11Q8NHH1 800 aa16.61■□□□□ 0.25
HDAC6-220ENST00000477528 ALDH8A1Q9H2A2 487 aaPredicted RBP16.61■□□□□ 0.25
HDAC6-220ENST00000477528 BMS1Q14692 1282 aaKnown RBP16.6■□□□□ 0.25
HDAC6-220ENST00000477528 CCDC40Q4G0X9 1142 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 CERS3Q8IU89 383 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 F8W031 263 aaPredicted RBP16.6■□□□□ 0.25
HDAC6-220ENST00000477528 MYO1BO43795 1136 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 POSTNQ15063 836 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 PIK3AP1Q6ZUJ8 805 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 FANCBQ8NB91 859 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 TDRD7Q8NHU6 1098 aaKnown RBP16.6■□□□□ 0.25
HDAC6-220ENST00000477528 TAF4BQ92750 862 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 FERMT2Q96AC1 680 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 ZC3H12CQ9C0D7 883 aaKnown RBP16.6■□□□□ 0.25
HDAC6-220ENST00000477528 GYG1P46976 350 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 APOA5Q6Q788 366 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 TEX11Q8IYF3 940 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 EHBP1Q8NDI1 1231 aa16.6■□□□□ 0.25
HDAC6-220ENST00000477528 MRFAP1L1Q96HT8 127 aa16.59■□□□□ 0.25
HDAC6-220ENST00000477528 POLR3EQ9NVU0 708 aa16.59■□□□□ 0.25
HDAC6-220ENST00000477528 CLIC4Q9Y696 253 aa16.59■□□□□ 0.25
HDAC6-220ENST00000477528 PARP1P09874 1014 aaKnown RBP16.59■□□□□ 0.25
HDAC6-220ENST00000477528 TSGA10IPQ3SY00 556 aa16.59■□□□□ 0.25
HDAC6-220ENST00000477528 SYT10Q6XYQ8 523 aa16.59■□□□□ 0.25
HDAC6-220ENST00000477528 CCDC102AQ96A19 550 aa16.59■□□□□ 0.25
HDAC6-220ENST00000477528 RBM17Q96I25 401 aaKnown RBP16.59■□□□□ 0.25
HDAC6-220ENST00000477528 MAP9Q49MG5 647 aa16.59■□□□□ 0.25
HDAC6-220ENST00000477528 ZNF622Q969S3 477 aaKnown RBP eCLIP16.59■□□□□ 0.251e-6■□□□□ 10.1
HDAC6-220ENST00000477528 BAG1Q99933 345 aaPredicted RBP16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 122.6 ms