RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 MAOBP27338 520 aa5.83□□□□□ -1.48
VPS13D-207ENST00000476169 HNRNPUQ00839 825 aaKnown RBP eCLIP5.83□□□□□ -1.48
VPS13D-207ENST00000476169 PDE3AQ14432 1141 aa5.83□□□□□ -1.48
VPS13D-207ENST00000476169 WIPI1Q5MNZ9 446 aaPredicted RBP5.83□□□□□ -1.48
VPS13D-207ENST00000476169 C8orf86Q6ZUL3 223 aa5.83□□□□□ -1.48
VPS13D-207ENST00000476169 CHSY3Q70JA7 882 aa5.83□□□□□ -1.48
VPS13D-207ENST00000476169 EDARADDQ8WWZ3 215 aa5.83□□□□□ -1.48
VPS13D-207ENST00000476169 USP26Q9BXU7 913 aa5.83□□□□□ -1.48
VPS13D-207ENST00000476169 CCDC86Q9H6F5 360 aaKnown RBP5.83□□□□□ -1.48
VPS13D-207ENST00000476169 EHMT1Q9H9B1 1298 aa5.83□□□□□ -1.48
VPS13D-207ENST00000476169 KRT82Q9NSB4 513 aa5.83□□□□□ -1.48
VPS13D-207ENST00000476169 CACNA2D2Q9NY47 1150 aa5.83□□□□□ -1.48
VPS13D-207ENST00000476169 ACTR10Q9NZ32 417 aa5.83□□□□□ -1.48
VPS13D-207ENST00000476169 POLR3KQ9Y2Y1 108 aaPredicted RBP5.83□□□□□ -1.48
VPS13D-207ENST00000476169 CCDC85CA6NKD9 419 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 ADAMTS2O95450 1211 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 ECEL1O95672 775 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 CDK8P49336 464 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 MSL1Q68DK7 614 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 C1orf229Q6ZS94 237 aaPredicted RBP5.82□□□□□ -1.48
VPS13D-207ENST00000476169 FILIP1Q7Z7B0 1213 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 LSRQ86X29 649 aaPredicted RBP5.82□□□□□ -1.48
VPS13D-207ENST00000476169 GALNT6Q8NCL4 622 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 SLC16A10Q8TF71 515 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 KLHDC7BQ96G42 594 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 DEPDC7Q96QD5 511 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 NRSN2Q9GZP1 204 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 SNTG2Q9NY99 539 aa5.82□□□□□ -1.48
VPS13D-207ENST00000476169 NOP58Q9Y2X3 529 aaKnown RBP5.82□□□□□ -1.48
VPS13D-207ENST00000476169 ERBB4Q15303 1308 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 TERTO14746 1132 aaKnown RBP5.81□□□□□ -1.48
VPS13D-207ENST00000476169 ATE1O95260 518 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 AMPD1P23109 780 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 NLRP12P59046 1061 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 KRT76Q01546 638 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 SUZ12Q15022 739 aaKnown RBP5.81□□□□□ -1.48
VPS13D-207ENST00000476169 LRFN4Q6PJG9 635 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 HDXQ7Z353 690 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 KLHL23Q8NBE8 558 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 RBBP8NLQ8NC74 664 aaPredicted RBP5.81□□□□□ -1.48
VPS13D-207ENST00000476169 ELMO3Q96BJ8 720 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 PLPPR2Q96GM1 343 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 BTBD6Q96KE9 485 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 COL4A3BPQ9Y5P4 624 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 SNCAIPQ9Y6H5 919 aa5.81□□□□□ -1.48
VPS13D-207ENST00000476169 GFRA2O00451 464 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 OIP5O43482 229 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 ZNF862O60290 1169 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 HTR3BO95264 441 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 CTSBP07858 339 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 SELPP16109 830 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 LIG1P18858 919 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 MLECQ14165 292 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 INPP5AQ14642 412 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 RASA3Q14644 834 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 SETDB1Q15047 1291 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 PPP2R5EQ16537 467 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 DDR2Q16832 855 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 LRRFIP1Q32MZ4 808 aaKnown RBP5.8□□□□□ -1.48
VPS13D-207ENST00000476169 HP1BP3Q5SSJ5 553 aaPredicted RBP5.8□□□□□ -1.48
VPS13D-207ENST00000476169 LARP1BQ659C4 914 aaKnown RBP5.8□□□□□ -1.48
VPS13D-207ENST00000476169 LRP10Q7Z4F1 713 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 MAP4K3Q8IVH8 894 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 DMRTC2Q8IXT2 367 aaPredicted RBP5.8□□□□□ -1.48
VPS13D-207ENST00000476169 CELF2-AS1Q8N7Q2 184 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 IRF7Q92985 503 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 PSMD1Q99460 953 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 PRDM6Q9NQX0 595 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 ST7Q9NRC1 585 aa5.8□□□□□ -1.48
VPS13D-207ENST00000476169 FAM221BA6H8Z2 402 aa5.79□□□□□ -1.48
VPS13D-207ENST00000476169 PPP1R12AO14974 1030 aaPredicted RBP5.79□□□□□ -1.48
VPS13D-207ENST00000476169 FXNQ16595 210 aa5.79□□□□□ -1.48
VPS13D-207ENST00000476169 RUFY4Q6ZNE9 571 aa5.79□□□□□ -1.48
VPS13D-207ENST00000476169 GALNT11Q8NCW6 608 aa5.79□□□□□ -1.48
VPS13D-207ENST00000476169 SLKQ9H2G2 1235 aaPredicted RBP5.79□□□□□ -1.48
VPS13D-207ENST00000476169 TNKS2Q9H2K2 1166 aa5.79□□□□□ -1.48
VPS13D-207ENST00000476169 ANTXR1Q9H6X2 564 aa5.79□□□□□ -1.48
VPS13D-207ENST00000476169 CORINQ9Y5Q5 1042 aa5.79□□□□□ -1.48
VPS13D-207ENST00000476169 LOC100289279A0A1B0GTE1 492 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 DCDC2CA8MYV0 355 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 SHISA8B8ZZ34 492 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 DNAJC6O75061 913 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 BCRP11274 1271 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 CD68P34810 354 aaPredicted RBP5.78□□□□□ -1.48
VPS13D-207ENST00000476169 CASP7P55210 303 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 CHMP4BP1P59074 171 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 KIF4BQ2VIQ3 1234 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 FAM9AQ8IZU1 332 aaPredicted RBP5.78□□□□□ -1.48
VPS13D-207ENST00000476169 C19orf47Q8N9M1 422 aaKnown RBP5.78□□□□□ -1.48
VPS13D-207ENST00000476169 TMEM40Q8WWA1 233 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 WDR89Q96FK6 387 aaPredicted RBP5.78□□□□□ -1.48
VPS13D-207ENST00000476169 TM9SF2Q99805 663 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 CCDC113Q9H0I3 377 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 IFT57Q9NWB7 429 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 REV1Q9UBZ9 1251 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 MAPK8IP1Q9UQF2 711 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 MSRB2Q9Y3D2 182 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 TACC3Q9Y6A5 838 aa5.78□□□□□ -1.48
VPS13D-207ENST00000476169 PRR36Q9H6K5 1346 aa5.77□□□□□ -1.49
VPS13D-207ENST00000476169 PRAMEF27A3QJZ7 478 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms