RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TIFAQ96CG3 184 aa6.3□□□□□ -1.4
USP4-209ENST00000475873 RNPC3Q96LT9 517 aaKnown RBP6.3□□□□□ -1.4
USP4-209ENST00000475873 PLEKHF1Q96S99 279 aa6.3□□□□□ -1.4
USP4-209ENST00000475873 CDC5LQ99459 802 aaKnown RBP6.3□□□□□ -1.4
USP4-209ENST00000475873 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.3□□□□□ -1.4
USP4-209ENST00000475873 SERPINA10Q9UK55 444 aa6.3□□□□□ -1.4
USP4-209ENST00000475873 TTF2Q9UNY4 1162 aaKnown RBP6.3□□□□□ -1.4
USP4-209ENST00000475873 MYO15AQ9UKN7 3530 aa6.3□□□□□ -1.4
USP4-209ENST00000475873 ZFHX2Q9C0A1 2572 aaPredicted RBP6.29□□□□□ -1.4
USP4-209ENST00000475873 GRXCR1A8MXD5 290 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 PI4K2BG5E9Z4 385 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 CXCL11O14625 94 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 TAF5LO75529 589 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 CYP2B6P20813 491 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 CRKP46108 304 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 CHRNDQ07001 517 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 FAM110CQ1W6H9 321 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 NOL9Q5SY16 702 aaKnown RBP6.29□□□□□ -1.4
USP4-209ENST00000475873 TREML2Q5T2D2 321 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 RIF1Q5UIP0 2472 aaKnown RBP6.29□□□□□ -1.4
USP4-209ENST00000475873 ZNF341Q9BYN7 854 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 ATP11BQ9Y2G3 1177 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 CFAP47Q6ZTR5 3102 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 ATRNL1Q5VV63 1379 aa6.29□□□□□ -1.4
USP4-209ENST00000475873 RPAP1Q9BWH6 1393 aaPredicted RBP6.29□□□□□ -1.4
USP4-209ENST00000475873 KMT2BQ9UMN6 2715 aaPredicted RBP6.28□□□□□ -1.4
USP4-209ENST00000475873 CHD8Q9HCK8 2581 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 TLL1O43897 1013 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 KRT37O76014 449 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 NFE2L2Q16236 605 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 TRIM60Q495X7 471 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 MFSD14BQ5SR56 506 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 GADL1Q6ZQY3 521 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 CCDC84Q86UT8 332 aaPredicted RBP6.28□□□□□ -1.4
USP4-209ENST00000475873 CCDC191Q8NCU4 936 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 IL27Q8NEV9 243 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 SMCR8Q8TEV9 937 aaPredicted RBP6.28□□□□□ -1.4
USP4-209ENST00000475873 USP6NLQ92738 828 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 GAS2L1Q99501 681 aaPredicted RBP6.28□□□□□ -1.4
USP4-209ENST00000475873 MYD88Q99836 296 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 PBX4Q9BYU1 374 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 PRDM5Q9NQX1 630 aaPredicted RBP6.28□□□□□ -1.4
USP4-209ENST00000475873 SLC45A1Q9Y2W3 748 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 AFG3L2Q9Y4W6 797 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 GBF1Q92538 1859 aa6.28□□□□□ -1.4
USP4-209ENST00000475873 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.27□□□□□ -1.41
USP4-209ENST00000475873 HSFX3A0A1B0GWH4 333 aaPredicted RBP6.27□□□□□ -1.41
USP4-209ENST00000475873 PHF20L1A8MW92 1017 aa6.27□□□□□ -1.41
USP4-209ENST00000475873 PRR33A8MZF0 331 aa6.27□□□□□ -1.41
USP4-209ENST00000475873 IGFBP4P22692 258 aa6.27□□□□□ -1.41
USP4-209ENST00000475873 TNNI2P48788 182 aa6.27□□□□□ -1.41
USP4-209ENST00000475873 SNX17Q15036 470 aa6.27□□□□□ -1.41
USP4-209ENST00000475873 APOBEC3HQ6NTF7 200 aaKnown RBP6.27□□□□□ -1.41
USP4-209ENST00000475873 FAM83AQ86UY5 434 aa6.27□□□□□ -1.41
USP4-209ENST00000475873 PHAXQ9H814 394 aaKnown RBP6.27□□□□□ -1.41
USP4-209ENST00000475873 PRKAG2Q9UGJ0 569 aa6.27□□□□□ -1.41
USP4-209ENST00000475873 ZHX2Q9Y6X8 837 aa6.27□□□□□ -1.41
USP4-209ENST00000475873 NCOR2Q9Y618 2525 aa6.27□□□□□ -1.41
USP4-209ENST00000475873 LOC285556D6RIA3 1793 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 ERC2O15083 957 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 IGKV5-2P06315 115 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 XRCC5P13010 732 aaKnown RBP6.26□□□□□ -1.41
USP4-209ENST00000475873 PTPRAP18433 802 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 ITGA6P23229 1130 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 HDGFL1Q5TGJ6 251 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 FKBP1CQ5VVH2 108 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 DCAF15Q66K64 600 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 SLC39A5Q6ZMH5 540 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 C16orf59Q7L2K0 433 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 FASTKD5Q7L8L6 764 aaKnown RBP6.26□□□□□ -1.41
USP4-209ENST00000475873 ZFPM1Q8IX07 1006 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 TRPV1Q8NER1 839 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 TDRD7Q8NHU6 1098 aaKnown RBP6.26□□□□□ -1.41
USP4-209ENST00000475873 ANKRD2Q9GZV1 360 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 TXNRD2Q9NNW7 524 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 CWC25Q9NXE8 425 aaPredicted RBP6.26□□□□□ -1.41
USP4-209ENST00000475873 FLRT1Q9NZU1 646 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 AGTPBP1Q9UPW5 1226 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 FAM186AA6NE01 2351 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 DMDP11532 3685 aa6.26□□□□□ -1.41
USP4-209ENST00000475873 DNAH14Q0VDD8 3507 aa6.25□□□□□ -1.41
USP4-209ENST00000475873 DNM1LO00429 736 aa6.25□□□□□ -1.41
USP4-209ENST00000475873 KCNJ4P48050 445 aa6.25□□□□□ -1.41
USP4-209ENST00000475873 EIF4G2P78344 907 aaKnown RBP eCLIP6.25□□□□□ -1.41
USP4-209ENST00000475873 NFIAQ12857 509 aa6.25□□□□□ -1.41
USP4-209ENST00000475873 GJC2Q5T442 439 aaPredicted RBP6.25□□□□□ -1.41
USP4-209ENST00000475873 RASIP1Q5U651 963 aa6.25□□□□□ -1.41
USP4-209ENST00000475873 KRT40Q6A162 431 aa6.25□□□□□ -1.41
USP4-209ENST00000475873 ZNF804AQ7Z570 1209 aa6.25□□□□□ -1.41
USP4-209ENST00000475873 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.25□□□□□ -1.412e-7■■□□□ 14.2
USP4-209ENST00000475873 DBF4Q9UBU7 674 aaPredicted RBP6.25□□□□□ -1.41
USP4-209ENST00000475873 NUDCQ9Y266 331 aa6.25□□□□□ -1.41
USP4-209ENST00000475873 YBX2Q9Y2T7 364 aaKnown RBP6.25□□□□□ -1.41
USP4-209ENST00000475873 GVINP1Q7Z2Y8 2422 aa6.25□□□□□ -1.41
USP4-209ENST00000475873 DOCK1Q14185 1865 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 VPS13AQ96RL7 3174 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 TRIM75PA6NK02 468 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 ST18O60284 1047 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 IGHA2P01877 340 aa6.24□□□□□ -1.41
USP4-209ENST00000475873 HSP90B1P14625 803 aaKnown RBP6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms