RNA–Protein interactions for RNA: ENST00000474546.1

CCDC93-208, Transcript of coiled-coil domain containing 93, humanhuman

TSL 3

Gene CCDC93, Length 452 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC93-208ENST00000474546 ATG3Q9NT62 314 aa9.2□□□□□ -0.94
CCDC93-208ENST00000474546 IFNKQ9P0W0 207 aa9.2□□□□□ -0.94
CCDC93-208ENST00000474546 MAP3K2Q9Y2U5 619 aa9.2□□□□□ -0.94
CCDC93-208ENST00000474546 CPDO75976 1380 aa9.2□□□□□ -0.94
CCDC93-208ENST00000474546 CARMIL3Q8ND23 1372 aa9.2□□□□□ -0.94
CCDC93-208ENST00000474546 MKI67P46013 3256 aaKnown RBP9.2□□□□□ -0.94
CCDC93-208ENST00000474546 A0A0D9SFI3 127 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 ZBTB7CA1YPR0 619 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 FAM177BA6PVY3 158 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 CPLX1O14810 134 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 KIF5CO60282 957 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 URI1O94763 535 aaPredicted RBP9.19□□□□□ -0.94
CCDC93-208ENST00000474546 CCDC175P0C221 793 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 CPA1P15085 419 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 USP5P45974 858 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 SCRN1Q12765 414 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 TRIM14Q14142 442 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 SMC1AQ14683 1233 aaKnown RBP9.19□□□□□ -0.94
CCDC93-208ENST00000474546 ZSCAN26Q16670 478 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 IQCEQ6IPM2 695 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 CC2D1AQ6P1N0 951 aaPredicted RBP9.19□□□□□ -0.94
CCDC93-208ENST00000474546 VSTM4Q8IW00 320 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 SMARCE1Q969G3 411 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 FAM227BQ96M60 508 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 PANX2Q96RD6 677 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 VIPAS39Q9H9C1 493 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 TRMT1Q9NXH9 659 aaKnown RBP9.19□□□□□ -0.94
CCDC93-208ENST00000474546 CEP131Q9UPN4 1083 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 LTBP1Q14766 1721 aa9.19□□□□□ -0.94
CCDC93-208ENST00000474546 BRCA1P38398 1863 aaKnown RBP9.19□□□□□ -0.94
CCDC93-208ENST00000474546 A0A1B0GUL7 405 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 CUTAO60888 179 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 ZNF202O95125 648 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 BMP15O95972 392 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 EIF2S2P20042 333 aaKnown RBP9.18□□□□□ -0.94
CCDC93-208ENST00000474546 COL9A1P20849 921 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 HOXD11P31277 338 aaPredicted RBP9.18□□□□□ -0.94
CCDC93-208ENST00000474546 ACTN2P35609 894 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 ECE1P42892 770 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 SYKP43405 635 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 EXOSC10Q01780 885 aaKnown RBP9.18□□□□□ -0.94
CCDC93-208ENST00000474546 PPP2R3AQ06190 1150 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 TRIM29Q14134 588 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 IMMTQ16891 758 aaKnown RBP9.18□□□□□ -0.94
CCDC93-208ENST00000474546 CFAP100Q494V2 611 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 CCDC102BQ68D86 513 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 SPECC1LQ69YQ0 1117 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 NBPF11Q86T75 865 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 RPAINQ86UA6 219 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 EHBP1Q8NDI1 1231 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 FAM71BQ8TC56 605 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 PPM1EQ8WY54 764 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 EAF2Q96CJ1 260 aaPredicted RBP9.18□□□□□ -0.94
CCDC93-208ENST00000474546 FAM122AQ96E09 287 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 ACSBG1Q96GR2 724 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 USP28Q96RU2 1077 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 BAG1Q99933 345 aaPredicted RBP9.18□□□□□ -0.94
CCDC93-208ENST00000474546 MTA3Q9BTC8 594 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.18□□□□□ -0.94
CCDC93-208ENST00000474546 ZNF446Q9NWS9 450 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 PCDHA7Q9UN72 937 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 TTF2Q9UNY4 1162 aaKnown RBP9.18□□□□□ -0.94
CCDC93-208ENST00000474546 MRFAP1Q9Y605 127 aa9.18□□□□□ -0.94
CCDC93-208ENST00000474546 LTN1O94822 1766 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 KIAA1551Q9HCM1 1747 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 WDR17Q8IZU2 1322 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 USP27XA6NNY8 438 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 SASH1O94885 1247 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 CLSTN1O94985 981 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 ERCC5P28715 1186 aaPredicted RBP9.17□□□□□ -0.94
CCDC93-208ENST00000474546 PLA2G4AP47712 749 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 HNRNPH2P55795 449 aaKnown RBP9.17□□□□□ -0.94
CCDC93-208ENST00000474546 PDE4CQ08493 712 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 RAD51AP2Q09MP3 1159 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 STK3Q13188 491 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 SLC39A14Q15043 492 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 WHAMMP3Q1A5X7 153 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 RABL6Q3YEC7 729 aaPredicted RBP9.17□□□□□ -0.94
CCDC93-208ENST00000474546 FILIP1LQ4L180 1135 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 TNNI3KQ59H18 835 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 MYSM1Q5VVJ2 828 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 ANO1Q5XXA6 986 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 CCDC70Q6NSX1 233 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 ARMCX5Q6P1M9 558 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 RSRC2Q7L4I2 434 aaKnown RBP9.17□□□□□ -0.94
CCDC93-208ENST00000474546 ARHGEF25Q86VW2 580 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 SPATS2Q86XZ4 545 aaKnown RBP9.17□□□□□ -0.94
CCDC93-208ENST00000474546 CNGA4Q8IV77 575 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 ANKRD20A12PQ8NF67 263 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 JARID2Q92833 1246 aaPredicted RBP9.17□□□□□ -0.94
CCDC93-208ENST00000474546 BOLA2Q9H3K6 86 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 TSKSQ9UJT2 592 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 PPP2R2CQ9Y2T4 447 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 PARP3Q9Y6F1 533 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 FPGT-TNNI3KV9GXZ4 949 aa9.17□□□□□ -0.94
CCDC93-208ENST00000474546 SIPA1L3O60292 1781 aaPredicted RBP9.17□□□□□ -0.94
CCDC93-208ENST00000474546 CIAO1O76071 339 aa9.16□□□□□ -0.94
CCDC93-208ENST00000474546 CYP21A2P08686 494 aa9.16□□□□□ -0.94
CCDC93-208ENST00000474546 OAS2P29728 719 aaKnown RBP9.16□□□□□ -0.94
CCDC93-208ENST00000474546 PDIA3P30101 505 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms