RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 PKN2Q16513 984 aaKnown RBP10.01□□□□□ -0.81
USP48-207ENST00000471752 SHROOM1Q2M3G4 852 aaPredicted RBP10.01□□□□□ -0.81
USP48-207ENST00000471752 ADGRA1Q86SQ6 560 aa10.01□□□□□ -0.81
USP48-207ENST00000471752 DBNDD2Q9BQY9 259 aa10.01□□□□□ -0.81
USP48-207ENST00000471752 ZNF341Q9BYN7 854 aa10.01□□□□□ -0.81
USP48-207ENST00000471752 EFCC1Q9HA90 598 aa10.01□□□□□ -0.81
USP48-207ENST00000471752 TMOD2Q9NZR1 351 aa10.01□□□□□ -0.81
USP48-207ENST00000471752 CPA4Q9UI42 421 aa10.01□□□□□ -0.81
USP48-207ENST00000471752 PTCH2Q9Y6C5 1203 aa10.01□□□□□ -0.81
USP48-207ENST00000471752 CEP290O15078 2479 aa10.01□□□□□ -0.81
USP48-207ENST00000471752 RANBP2P49792 3224 aaKnown RBP10□□□□□ -0.81
USP48-207ENST00000471752 IPO8O15397 1037 aaKnown RBP10□□□□□ -0.81
USP48-207ENST00000471752 CYP2C8P10632 490 aa10□□□□□ -0.81
USP48-207ENST00000471752 G3BP1Q13283 466 aaKnown RBP eCLIP10□□□□□ -0.81
USP48-207ENST00000471752 PPIL2Q13356 520 aa10□□□□□ -0.81
USP48-207ENST00000471752 ZKSCAN2Q63HK3 967 aa10□□□□□ -0.81
USP48-207ENST00000471752 SPATA5Q8NB90 893 aa10□□□□□ -0.81
USP48-207ENST00000471752 SSH3Q8TE77 659 aa10□□□□□ -0.81
USP48-207ENST00000471752 NSUN4Q96CB9 384 aaKnown RBP10□□□□□ -0.81
USP48-207ENST00000471752 FAM163AQ96GL9 167 aaPredicted RBP10□□□□□ -0.81
USP48-207ENST00000471752 IDI2Q9BXS1 227 aa10□□□□□ -0.81
USP48-207ENST00000471752 MAST3O60307 1309 aa10□□□□□ -0.81
USP48-207ENST00000471752 RFX7Q2KHR2 1363 aa10□□□□□ -0.81
USP48-207ENST00000471752 ARAP2Q8WZ64 1704 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 ZSWIM8A7E2V4 1837 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 GPR75-ASB3A0A0A6YYF3 556 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 SEMA3EO15041 775 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 PEX10O60683 326 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 CYP2E1P05181 493 aaPredicted RBP9.99□□□□□ -0.81
USP48-207ENST00000471752 CETPP11597 493 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 MAP3K10Q02779 954 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 PPATQ06203 517 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 SNAPC2Q13487 334 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 OTUD7BQ6GQQ9 843 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 C17orf99Q6UX52 265 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 SH3RF3Q8TEJ3 882 aaPredicted RBP9.99□□□□□ -0.81
USP48-207ENST00000471752 SH3TC2Q8TF17 1288 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 EAF2Q96CJ1 260 aaPredicted RBP9.99□□□□□ -0.81
USP48-207ENST00000471752 CCDC8Q9H0W5 538 aaPredicted RBP9.99□□□□□ -0.81
USP48-207ENST00000471752 ZFYVE28Q9HCC9 887 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 PIH1D3Q9NQM4 214 aaKnown RBP9.99□□□□□ -0.81
USP48-207ENST00000471752 KCNH4Q9UQ05 1017 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 ZHX2Q9Y6X8 837 aa9.99□□□□□ -0.81
USP48-207ENST00000471752 PDHXO00330 501 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 TLR2O60603 784 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 SURF6O75683 361 aaKnown RBP9.98□□□□□ -0.81
USP48-207ENST00000471752 PTPRAP18433 802 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 ARID4AP29374 1257 aaPredicted RBP9.98□□□□□ -0.81
USP48-207ENST00000471752 DYNLL1P63167 89 aaKnown RBP9.98□□□□□ -0.81
USP48-207ENST00000471752 TNNI3KQ59H18 835 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 DCAF15Q66K64 600 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 ERICH6Q7L0X2 663 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 DZIP1Q86YF9 867 aaKnown RBP9.98□□□□□ -0.81
USP48-207ENST00000471752 ERO1AQ96HE7 468 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 TRIM47Q96LD4 638 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 RAI14Q9P0K7 980 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 DBNLQ9UJU6 430 aaKnown RBP9.98□□□□□ -0.81
USP48-207ENST00000471752 AKAP2Q9Y2D5 859 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 FPGT-TNNI3KV9GXZ4 949 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 MROH7-TTC4A0A0A0MT08 1334 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 ADGRA2Q96PE1 1338 aa9.98□□□□□ -0.81
USP48-207ENST00000471752 ENTPD3O75355 529 aa9.97□□□□□ -0.81
USP48-207ENST00000471752 ZAP70P43403 619 aa9.97□□□□□ -0.81
USP48-207ENST00000471752 LACTBP83111 547 aaPredicted RBP9.97□□□□□ -0.81
USP48-207ENST00000471752 EVX2Q03828 476 aa9.97□□□□□ -0.81
USP48-207ENST00000471752 MVPQ14764 893 aaKnown RBP9.97□□□□□ -0.81
USP48-207ENST00000471752 MTFR1Q15390 333 aa9.97□□□□□ -0.81
USP48-207ENST00000471752 SLC4A8Q2Y0W8 1093 aa9.97□□□□□ -0.81
USP48-207ENST00000471752 NOL9Q5SY16 702 aaKnown RBP9.97□□□□□ -0.81
USP48-207ENST00000471752 GORABQ5T7V8 394 aa9.97□□□□□ -0.81
USP48-207ENST00000471752 ITPRIPQ8IWB1 547 aa9.97□□□□□ -0.81
USP48-207ENST00000471752 ZSCAN29Q8IWY8 852 aaPredicted RBP9.97□□□□□ -0.81
USP48-207ENST00000471752 ARMC5Q96C12 935 aa9.97□□□□□ -0.81
USP48-207ENST00000471752 ANTXR1Q9H6X2 564 aa9.97□□□□□ -0.81
USP48-207ENST00000471752 AFG3L2Q9Y4W6 797 aa9.97□□□□□ -0.81
USP48-207ENST00000471752 RPAP1Q9BWH6 1393 aaPredicted RBP9.97□□□□□ -0.81
USP48-207ENST00000471752 TREML2Q5T2D2 321 aa9.96□□□□□ -0.82
USP48-207ENST00000471752 CEP85Q6P2H3 762 aa9.96□□□□□ -0.82
USP48-207ENST00000471752 ANKRD23Q86SG2 305 aa9.96□□□□□ -0.82
USP48-207ENST00000471752 SIRT2Q8IXJ6 389 aa9.96□□□□□ -0.82
USP48-207ENST00000471752 SCYL3Q8IZE3 742 aa9.96□□□□□ -0.82
USP48-207ENST00000471752 ZNF333Q96JL9 665 aa9.96□□□□□ -0.82
USP48-207ENST00000471752 AATFQ9NY61 560 aaKnown RBP eCLIP9.96□□□□□ -0.82
USP48-207ENST00000471752 GABRQQ9UN88 632 aa9.96□□□□□ -0.82
USP48-207ENST00000471752 HDAC5Q9UQL6 1122 aa9.96□□□□□ -0.82
USP48-207ENST00000471752 EXOC6BQ9Y2D4 811 aa9.96□□□□□ -0.82
USP48-207ENST00000471752 NOP58Q9Y2X3 529 aaKnown RBP9.96□□□□□ -0.82
USP48-207ENST00000471752 PDS5AQ29RF7 1337 aaKnown RBP9.96□□□□□ -0.82
USP48-207ENST00000471752 MYH13Q9UKX3 1938 aa9.95□□□□□ -0.82
USP48-207ENST00000471752 SZT2Q5T011 3432 aa9.95□□□□□ -0.82
USP48-207ENST00000471752 A0A0G2JLL6 359 aaPredicted RBP9.95□□□□□ -0.82
USP48-207ENST00000471752 TRIM75PA6NK02 468 aa9.95□□□□□ -0.82
USP48-207ENST00000471752 CHGBP05060 677 aa9.95□□□□□ -0.82
USP48-207ENST00000471752 BCRP11274 1271 aa9.95□□□□□ -0.82
USP48-207ENST00000471752 OSBPP22059 807 aa9.95□□□□□ -0.82
USP48-207ENST00000471752 PSMC4P43686 418 aa9.95□□□□□ -0.82
USP48-207ENST00000471752 SLFNL1Q499Z3 407 aa9.95□□□□□ -0.82
USP48-207ENST00000471752 C20orf194Q5TEA3 1177 aa9.95□□□□□ -0.82
USP48-207ENST00000471752 SPTY2D1Q68D10 685 aaPredicted RBP9.95□□□□□ -0.82
USP48-207ENST00000471752 GADL1Q6ZQY3 521 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms