RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 CWC22Q9HCG8 908 aaKnown RBP8.65□□□□□ -1.02
HDAC1-204ENST00000471488 UNC80Q8N2C7 3258 aa8.65□□□□□ -1.03
HDAC1-204ENST00000471488 ALPK3Q96L96 1907 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 A0A0G2JLL6 359 aaPredicted RBP8.64□□□□□ -1.03
HDAC1-204ENST00000471488 IFIT1P09914 478 aaKnown RBP8.64□□□□□ -1.03
HDAC1-204ENST00000471488 SLURP2P0DP57 97 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 PTPRAP18433 802 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 CYP2B6P20813 491 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 IRF5Q13568 498 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 NOL9Q5SY16 702 aaKnown RBP8.64□□□□□ -1.03
HDAC1-204ENST00000471488 BEND3Q5T5X7 828 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 ZNF697Q5TEC3 545 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 FKBP1CQ5VVH2 108 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 PRRT2Q7Z6L0 340 aaPredicted RBP8.64□□□□□ -1.03
HDAC1-204ENST00000471488 ZFPM1Q8IX07 1006 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 CCAR1Q8IX12 1150 aaKnown RBP8.64□□□□□ -1.03
HDAC1-204ENST00000471488 ANKLE1Q8NAG6 615 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 KLHDC4Q8TBB5 520 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 SUCLG2Q96I99 432 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 CRISPLD2Q9H0B8 497 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 PNMA3Q9UL41 463 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 DAGLAQ9Y4D2 1042 aa8.64□□□□□ -1.03
HDAC1-204ENST00000471488 RPAP1Q9BWH6 1393 aaPredicted RBP8.63□□□□□ -1.03
HDAC1-204ENST00000471488 LDHBP07195 334 aaKnown RBP8.63□□□□□ -1.03
HDAC1-204ENST00000471488 RGS3P49796 1198 aa8.63□□□□□ -1.03
HDAC1-204ENST00000471488 TREML2Q5T2D2 321 aa8.63□□□□□ -1.03
HDAC1-204ENST00000471488 HHIPL2Q6UWX4 724 aa8.63□□□□□ -1.03
HDAC1-204ENST00000471488 GUCD1Q96NT3 240 aa8.63□□□□□ -1.03
HDAC1-204ENST00000471488 SRCIN1Q9C0H9 1055 aa8.63□□□□□ -1.03
HDAC1-204ENST00000471488 BICC1Q9H694 974 aaKnown RBP8.63□□□□□ -1.03
HDAC1-204ENST00000471488 PRKAG2Q9UGJ0 569 aa8.63□□□□□ -1.03
HDAC1-204ENST00000471488 ZNF112Q9UJU3 913 aa8.63□□□□□ -1.03
HDAC1-204ENST00000471488 FAM196BA6NMK8 535 aa8.62□□□□□ -1.03
HDAC1-204ENST00000471488 PDE8BO95263 885 aa8.62□□□□□ -1.03
HDAC1-204ENST00000471488 MYCNP04198 464 aaPredicted RBP8.62□□□□□ -1.03
HDAC1-204ENST00000471488 PRKAR2AP13861 404 aaKnown RBP8.62□□□□□ -1.03
HDAC1-204ENST00000471488 SLC5A1P13866 664 aa8.62□□□□□ -1.03
HDAC1-204ENST00000471488 PRDX5P30044 214 aa8.62□□□□□ -1.03
HDAC1-204ENST00000471488 ATN1P54259 1190 aaPredicted RBP8.62□□□□□ -1.03
HDAC1-204ENST00000471488 MAFAQ8NHW3 353 aaPredicted RBP8.62□□□□□ -1.03
HDAC1-204ENST00000471488 WDR66Q8TBY9 1149 aa8.62□□□□□ -1.03
HDAC1-204ENST00000471488 PRDM6Q9NQX0 595 aa8.62□□□□□ -1.03
HDAC1-204ENST00000471488 FAM198AQ9UFP1 575 aa8.62□□□□□ -1.03
HDAC1-204ENST00000471488 AGTPBP1Q9UPW5 1226 aa8.62□□□□□ -1.03
HDAC1-204ENST00000471488 AFG3L2Q9Y4W6 797 aa8.62□□□□□ -1.03
HDAC1-204ENST00000471488 DDX60LQ5H9U9 1706 aaKnown RBP8.62□□□□□ -1.03
HDAC1-204ENST00000471488 FANCIQ9NVI1 1328 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 PEX10O60683 326 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 NBPF7P0C2Y1 421 aaPredicted RBP8.61□□□□□ -1.03
HDAC1-204ENST00000471488 CAPN2P17655 700 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 HMGCS2P54868 508 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 EXOSC9Q06265 439 aaKnown RBP8.61□□□□□ -1.03
HDAC1-204ENST00000471488 SPP2Q13103 211 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 PDE3AQ14432 1141 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 PUM3Q15397 648 aaKnown RBP8.61□□□□□ -1.03
HDAC1-204ENST00000471488 FAM110CQ1W6H9 321 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 LRRC26Q2I0M4 334 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 WDR78Q5VTH9 848 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 DZIP1Q86YF9 867 aaKnown RBP8.61□□□□□ -1.03
HDAC1-204ENST00000471488 TRIB2Q92519 343 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 SENP6Q9GZR1 1112 aaPredicted RBP8.61□□□□□ -1.03
HDAC1-204ENST00000471488 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.61□□□□□ -1.03
HDAC1-204ENST00000471488 PRDM5Q9NQX1 630 aaPredicted RBP8.61□□□□□ -1.03
HDAC1-204ENST00000471488 SUGT1Q9Y2Z0 365 aa8.61□□□□□ -1.03
HDAC1-204ENST00000471488 PFASO15067 1338 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 ZKSCAN1P17029 563 aaPredicted RBP8.6□□□□□ -1.03
HDAC1-204ENST00000471488 COL9A1P20849 921 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 CNGA1P29973 690 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 IRX3P78415 501 aaPredicted RBP8.6□□□□□ -1.03
HDAC1-204ENST00000471488 PABPC4Q13310 644 aaKnown RBP eCLIP8.6□□□□□ -1.03
HDAC1-204ENST00000471488 WWC1Q8IX03 1113 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 MYLIPQ8WY64 445 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 CDX2Q99626 313 aaPredicted RBP8.6□□□□□ -1.03
HDAC1-204ENST00000471488 PAGR1Q9BTK6 254 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 MRIQ9BWK5 157 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 SIL1Q9H173 461 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 GNL3LQ9NVN8 582 aaKnown RBP8.6□□□□□ -1.03
HDAC1-204ENST00000471488 ABCF2Q9UG63 623 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 RAPGEFL1Q9UHV5 662 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 SLC45A1Q9Y2W3 748 aa8.6□□□□□ -1.03
HDAC1-204ENST00000471488 DDTLA6NHG4 134 aaPredicted RBP8.59□□□□□ -1.03
HDAC1-204ENST00000471488 PHF20L1A8MW92 1017 aa8.59□□□□□ -1.03
HDAC1-204ENST00000471488 CTNND1O60716 968 aaKnown RBP8.59□□□□□ -1.03
HDAC1-204ENST00000471488 VAMP4O75379 141 aa8.59□□□□□ -1.03
HDAC1-204ENST00000471488 ALDH1L1O75891 902 aa8.59□□□□□ -1.03
HDAC1-204ENST00000471488 FOSL2P15408 326 aa8.59□□□□□ -1.03
HDAC1-204ENST00000471488 CCND3P30281 292 aaPredicted RBP8.59□□□□□ -1.03
HDAC1-204ENST00000471488 GCLCP48506 637 aaPredicted RBP8.59□□□□□ -1.03
HDAC1-204ENST00000471488 PPM1EQ8WY54 764 aa8.59□□□□□ -1.03
HDAC1-204ENST00000471488 NUDT12Q9BQG2 462 aa8.59□□□□□ -1.03
HDAC1-204ENST00000471488 ASCC2Q9H1I8 757 aaPredicted RBP8.59□□□□□ -1.03
HDAC1-204ENST00000471488 OGDHLQ9ULD0 1010 aa8.59□□□□□ -1.03
HDAC1-204ENST00000471488 ATP11BQ9Y2G3 1177 aa8.59□□□□□ -1.03
HDAC1-204ENST00000471488 NDUFB9Q9Y6M9 179 aa8.59□□□□□ -1.03
HDAC1-204ENST00000471488 MYH13Q9UKX3 1938 aa8.58□□□□□ -1.04
HDAC1-204ENST00000471488 TMEM265A0A087WTH1 108 aa8.58□□□□□ -1.04
HDAC1-204ENST00000471488 POTEB2H3BUK9 544 aa8.58□□□□□ -1.04
HDAC1-204ENST00000471488 BTDP43251 543 aa8.58□□□□□ -1.04
HDAC1-204ENST00000471488 CACNB2Q08289 660 aaPredicted RBP8.58□□□□□ -1.04
HDAC1-204ENST00000471488 CCL14Q16627 93 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms