RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 ZHX2Q9Y6X8 837 aa18.18■□□□□ 0.5
CXCR4-203ENST00000466288 GPR153Q6NV75 609 aa18.17■□□□□ 0.5
CXCR4-203ENST00000466288 SCYL3Q8IZE3 742 aa18.17■□□□□ 0.5
CXCR4-203ENST00000466288 WDR66Q8TBY9 1149 aa18.17■□□□□ 0.5
CXCR4-203ENST00000466288 SLC45A1Q9Y2W3 748 aa18.17■□□□□ 0.5
CXCR4-203ENST00000466288 AFG3L2Q9Y4W6 797 aa18.17■□□□□ 0.5
CXCR4-203ENST00000466288 VCANP13611 3396 aa18.16■□□□□ 0.5
CXCR4-203ENST00000466288 TNPO2O14787 897 aaKnown RBP18.16■□□□□ 0.5
CXCR4-203ENST00000466288 IFIT1P09914 478 aaKnown RBP18.16■□□□□ 0.5
CXCR4-203ENST00000466288 PUM3Q15397 648 aaKnown RBP18.16■□□□□ 0.5
CXCR4-203ENST00000466288 DIS3LQ8TF46 1054 aaKnown RBP18.16■□□□□ 0.5
CXCR4-203ENST00000466288 SPINK5Q9NQ38 1064 aaPredicted RBP18.16■□□□□ 0.5
CXCR4-203ENST00000466288 PTPRAP18433 802 aa18.15■□□□□ 0.5
CXCR4-203ENST00000466288 PRDX5P30044 214 aa18.15■□□□□ 0.5
CXCR4-203ENST00000466288 NECAB2Q7Z6G3 386 aa18.15■□□□□ 0.5
CXCR4-203ENST00000466288 USP40Q9NVE5 1235 aa18.15■□□□□ 0.5
CXCR4-203ENST00000466288 GADL1Q6ZQY3 521 aa18.14■□□□□ 0.5
CXCR4-203ENST00000466288 DEFB123Q8N688 67 aa18.14■□□□□ 0.5
CXCR4-203ENST00000466288 SALL2Q9Y467 1007 aaPredicted RBP18.14■□□□□ 0.5
CXCR4-203ENST00000466288 PICK1Q9NRD5 415 aa18.14■□□□□ 0.49
CXCR4-203ENST00000466288 MGAMO43451 1857 aa18.13■□□□□ 0.49
CXCR4-203ENST00000466288 MAP3K10Q02779 954 aa18.13■□□□□ 0.49
CXCR4-203ENST00000466288 Q7L0L9 218 aa18.13■□□□□ 0.49
CXCR4-203ENST00000466288 C7orf61Q8IZ16 206 aa18.13■□□□□ 0.49
CXCR4-203ENST00000466288 SMCR8Q8TEV9 937 aaPredicted RBP18.13■□□□□ 0.49
CXCR4-203ENST00000466288 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.13■□□□□ 0.49
CXCR4-203ENST00000466288 TAOK2Q9UL54 1235 aa18.13■□□□□ 0.49
CXCR4-203ENST00000466288 ZMYND8Q9ULU4 1186 aaPredicted RBP18.13■□□□□ 0.49
CXCR4-203ENST00000466288 EYSQ5T1H1 3165 aa18.12■□□□□ 0.49
CXCR4-203ENST00000466288 LRIT3Q3SXY7 679 aa18.12■□□□□ 0.49
CXCR4-203ENST00000466288 SH3BP5LQ7L8J4 393 aa18.12■□□□□ 0.49
CXCR4-203ENST00000466288 ANKRD13CQ8N6S4 541 aa18.12■□□□□ 0.49
CXCR4-203ENST00000466288 ANKLE1Q8NAG6 615 aa18.12■□□□□ 0.49
CXCR4-203ENST00000466288 LPIN2Q92539 896 aa18.12■□□□□ 0.49
CXCR4-203ENST00000466288 COA7Q96BR5 231 aa18.12■□□□□ 0.49
CXCR4-203ENST00000466288 IDI2Q9BXS1 227 aa18.12■□□□□ 0.49
CXCR4-203ENST00000466288 STXBP5LQ9Y2K9 1186 aa18.12■□□□□ 0.49
CXCR4-203ENST00000466288 SLURP2P0DP57 97 aa18.11■□□□□ 0.49
CXCR4-203ENST00000466288 SLC5A1P13866 664 aa18.11■□□□□ 0.49
CXCR4-203ENST00000466288 RGS3P49796 1198 aa18.11■□□□□ 0.49
CXCR4-203ENST00000466288 ENTPD3O75355 529 aa18.1■□□□□ 0.49
CXCR4-203ENST00000466288 LDHBP07195 334 aaKnown RBP18.1■□□□□ 0.49
CXCR4-203ENST00000466288 RFX5P48382 616 aaPredicted RBP18.1■□□□□ 0.49
CXCR4-203ENST00000466288 MTMR10Q9NXD2 777 aa18.1■□□□□ 0.49
CXCR4-203ENST00000466288 AGTPBP1Q9UPW5 1226 aa18.1■□□□□ 0.49
CXCR4-203ENST00000466288 TRIM75PA6NK02 468 aa18.09■□□□□ 0.49
CXCR4-203ENST00000466288 EYA2O00167 538 aa18.09■□□□□ 0.49
CXCR4-203ENST00000466288 FAM110CQ1W6H9 321 aa18.09■□□□□ 0.49
CXCR4-203ENST00000466288 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.09■□□□□ 0.49
CXCR4-203ENST00000466288 LRRFIP2Q9Y608 721 aaKnown RBP18.09■□□□□ 0.49
CXCR4-203ENST00000466288 SALL1Q9NSC2 1324 aa18.09■□□□□ 0.49
CXCR4-203ENST00000466288 RFX7Q2KHR2 1363 aa18.09■□□□□ 0.49
CXCR4-203ENST00000466288 ALPK3Q96L96 1907 aa18.09■□□□□ 0.49
CXCR4-203ENST00000466288 DDTLA6NHG4 134 aaPredicted RBP18.08■□□□□ 0.49
CXCR4-203ENST00000466288 CTNND1O60716 968 aaKnown RBP18.08■□□□□ 0.49
CXCR4-203ENST00000466288 MAGEA10P43363 369 aaPredicted RBP18.08■□□□□ 0.49
CXCR4-203ENST00000466288 TREML2Q5T2D2 321 aa18.08■□□□□ 0.49
CXCR4-203ENST00000466288 ATG9AQ7Z3C6 839 aa18.08■□□□□ 0.49
CXCR4-203ENST00000466288 CCDC84Q86UT8 332 aaPredicted RBP18.08■□□□□ 0.49
CXCR4-203ENST00000466288 TDHQ8IZJ6 230 aa18.08■□□□□ 0.49
CXCR4-203ENST00000466288 NBPF3Q9H094 633 aa18.08■□□□□ 0.49
CXCR4-203ENST00000466288 DNAH12Q6ZR08 3092 aa18.08■□□□□ 0.48
CXCR4-203ENST00000466288 GAKO14976 1311 aa18.07■□□□□ 0.48
CXCR4-203ENST00000466288 HMGCRP04035 888 aa18.07■□□□□ 0.48
CXCR4-203ENST00000466288 SYN1P17600 705 aa18.07■□□□□ 0.48
CXCR4-203ENST00000466288 ZSCAN29Q8IWY8 852 aaPredicted RBP18.07■□□□□ 0.48
CXCR4-203ENST00000466288 USP44Q9H0E7 712 aa18.07■□□□□ 0.48
CXCR4-203ENST00000466288 GJD2Q9UKL4 321 aa18.07■□□□□ 0.48
CXCR4-203ENST00000466288 RPTORQ8N122 1335 aa18.07■□□□□ 0.48
CXCR4-203ENST00000466288 TRIM32Q13049 653 aa18.07■□□□□ 0.48
CXCR4-203ENST00000466288 DDX4Q9NQI0 724 aaKnown RBP18.07■□□□□ 0.48
CXCR4-203ENST00000466288 SPTBN5Q9NRC6 3674 aaKnown RBP18.06■□□□□ 0.48
CXCR4-203ENST00000466288 AK9Q5TCS8 1911 aa18.06■□□□□ 0.48
CXCR4-203ENST00000466288 ZNF316A6NFI3 1004 aaPredicted RBP18.06■□□□□ 0.48
CXCR4-203ENST00000466288 C11orf49Q9H6J7 331 aa18.06■□□□□ 0.48
CXCR4-203ENST00000466288 HMX1Q9NP08 348 aaPredicted RBP18.06■□□□□ 0.48
CXCR4-203ENST00000466288 PNMA3Q9UL41 463 aa18.06■□□□□ 0.48
CXCR4-203ENST00000466288 OGDHLQ9ULD0 1010 aa18.06■□□□□ 0.48
CXCR4-203ENST00000466288 PROCA1Q8NCQ7 364 aaPredicted RBP18.05■□□□□ 0.48
CXCR4-203ENST00000466288 COL25A1Q9BXS0 654 aaPredicted RBP18.05■□□□□ 0.48
CXCR4-203ENST00000466288 GNL3LQ9NVN8 582 aaKnown RBP18.05■□□□□ 0.48
CXCR4-203ENST00000466288 DENND2AQ9ULE3 1009 aa18.05■□□□□ 0.48
CXCR4-203ENST00000466288 SEMA3EO15041 775 aa18.04■□□□□ 0.48
CXCR4-203ENST00000466288 ZBTB22O15209 634 aa18.04■□□□□ 0.48
CXCR4-203ENST00000466288 PHKA1P46020 1223 aa18.04■□□□□ 0.48
CXCR4-203ENST00000466288 GCLCP48506 637 aaPredicted RBP18.04■□□□□ 0.48
CXCR4-203ENST00000466288 ATP2B3Q16720 1220 aa18.04■□□□□ 0.48
CXCR4-203ENST00000466288 FAM163AQ96GL9 167 aaPredicted RBP18.04■□□□□ 0.48
CXCR4-203ENST00000466288 PFASO15067 1338 aa18.03■□□□□ 0.48
CXCR4-203ENST00000466288 PRUNE2Q8WUY3 3088 aa18.03■□□□□ 0.48
CXCR4-203ENST00000466288 TBC1D12O60347 775 aa18.03■□□□□ 0.48
CXCR4-203ENST00000466288 MRPL50Q8N5N7 158 aaKnown RBP18.03■□□□□ 0.48
CXCR4-203ENST00000466288 UBE2OQ9C0C9 1292 aaKnown RBP18.03■□□□□ 0.48
CXCR4-203ENST00000466288 PTPRFP10586 1907 aa18.03■□□□□ 0.48
CXCR4-203ENST00000466288 DOCK2Q92608 1830 aa18.03■□□□□ 0.48
CXCR4-203ENST00000466288 DOCK3Q8IZD9 2030 aa18.03■□□□□ 0.48
CXCR4-203ENST00000466288 SPP2Q13103 211 aa18.02■□□□□ 0.48
CXCR4-203ENST00000466288 PICALMQ13492 652 aa18.02■□□□□ 0.48
CXCR4-203ENST00000466288 MAP3K21Q5TCX8 1036 aa18.02■□□□□ 0.48
CXCR4-203ENST00000466288 TRIB2Q92519 343 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms