RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 SYT1P21579 422 aa8.83□□□□□ -1
USP54-210ENST00000466048 KRT85P78386 507 aa8.83□□□□□ -1
USP54-210ENST00000466048 ME3Q16798 604 aa8.83□□□□□ -1
USP54-210ENST00000466048 CTCFLQ8NI51 663 aaPredicted RBP8.83□□□□□ -1
USP54-210ENST00000466048 GTF3C6Q969F1 213 aa8.83□□□□□ -1
USP54-210ENST00000466048 TRIM5Q9C035 493 aa8.83□□□□□ -1
USP54-210ENST00000466048 ZSCAN16Q9H4T2 348 aaPredicted RBP8.83□□□□□ -1
USP54-210ENST00000466048 SCN7AQ01118 1682 aa8.83□□□□□ -1
USP54-210ENST00000466048 PSDA5PKW4 1024 aaPredicted RBP8.83□□□□□ -1
USP54-210ENST00000466048 PFKFB2O60825 505 aa8.83□□□□□ -1
USP54-210ENST00000466048 KIF20AO95235 890 aa8.83□□□□□ -1
USP54-210ENST00000466048 PDE6AP16499 860 aa8.83□□□□□ -1
USP54-210ENST00000466048 NT5C2P49902 561 aa8.83□□□□□ -1
USP54-210ENST00000466048 KCNQ4P56696 695 aa8.83□□□□□ -1
USP54-210ENST00000466048 FBXL16Q8N461 479 aa8.83□□□□□ -1
USP54-210ENST00000466048 RGS22Q8NE09 1264 aa8.83□□□□□ -1
USP54-210ENST00000466048 SEC62Q99442 399 aaKnown RBP8.83□□□□□ -1
USP54-210ENST00000466048 KRT23Q9C075 422 aa8.83□□□□□ -1
USP54-210ENST00000466048 NDUFB9Q9Y6M9 179 aa8.83□□□□□ -1
USP54-210ENST00000466048 PHKA1P46020 1223 aa8.83□□□□□ -1
USP54-210ENST00000466048 GNAQP50148 359 aa8.83□□□□□ -1
USP54-210ENST00000466048 TERF1P54274 439 aa8.83□□□□□ -1
USP54-210ENST00000466048 SLC15A2Q16348 729 aa8.83□□□□□ -1
USP54-210ENST00000466048 HS1BP3Q53T59 392 aa8.83□□□□□ -1
USP54-210ENST00000466048 OSBP2Q969R2 916 aa8.83□□□□□ -1
USP54-210ENST00000466048 LMBRD1Q9NUN5 540 aa8.83□□□□□ -1
USP54-210ENST00000466048 TPCN1Q9ULQ1 816 aa8.83□□□□□ -1
USP54-210ENST00000466048 ARAP2Q8WZ64 1704 aa8.82□□□□□ -1
USP54-210ENST00000466048 PDS5AQ29RF7 1337 aaKnown RBP8.82□□□□□ -1
USP54-210ENST00000466048 CCDC192P0DO97 292 aa8.82□□□□□ -1
USP54-210ENST00000466048 ATL3Q6DD88 541 aa8.82□□□□□ -1
USP54-210ENST00000466048 TMEM87AQ8NBN3 555 aa8.82□□□□□ -1
USP54-210ENST00000466048 RNF214Q8ND24 703 aa8.82□□□□□ -1
USP54-210ENST00000466048 CCDC12Q8WUD4 166 aaPredicted RBP8.82□□□□□ -1
USP54-210ENST00000466048 BEGAINQ9BUH8 593 aa8.82□□□□□ -1
USP54-210ENST00000466048 SCAND2PQ9GZW5 306 aaPredicted RBP8.82□□□□□ -1
USP54-210ENST00000466048 SEC63Q9UGP8 760 aaKnown RBP8.82□□□□□ -1
USP54-210ENST00000466048 MYO3BQ8WXR4 1341 aa8.82□□□□□ -1
USP54-210ENST00000466048 ZNF532Q9HCE3 1301 aa8.82□□□□□ -1
USP54-210ENST00000466048 MINDY4BA8MYZ0 360 aa8.82□□□□□ -1
USP54-210ENST00000466048 GRAPQ13588 217 aa8.82□□□□□ -1
USP54-210ENST00000466048 DLGAP5Q15398 846 aa8.82□□□□□ -1
USP54-210ENST00000466048 DCAF15Q66K64 600 aa8.82□□□□□ -1
USP54-210ENST00000466048 GRAPLQ8TC17 118 aaPredicted RBP8.82□□□□□ -1
USP54-210ENST00000466048 BRF1Q92994 677 aa8.82□□□□□ -1
USP54-210ENST00000466048 MAGEB6P1A0A0J9YX57 407 aa8.82□□□□□ -1
USP54-210ENST00000466048 GOLGA6L7A0A1B0GV03 622 aa8.82□□□□□ -1
USP54-210ENST00000466048 PATL2C9JE40 543 aaKnown RBP8.82□□□□□ -1
USP54-210ENST00000466048 CPA1P15085 419 aa8.82□□□□□ -1
USP54-210ENST00000466048 ARHGEF6Q15052 776 aa8.82□□□□□ -1
USP54-210ENST00000466048 TMEM87BQ96K49 555 aa8.82□□□□□ -1
USP54-210ENST00000466048 ZNF396Q96N95 335 aaPredicted RBP8.82□□□□□ -1
USP54-210ENST00000466048 SEC31BQ9NQW1 1179 aa8.82□□□□□ -1
USP54-210ENST00000466048 ZBTB7AO95365 584 aa8.81□□□□□ -1
USP54-210ENST00000466048 HELBQ8NG08 1087 aaPredicted RBP8.81□□□□□ -1
USP54-210ENST00000466048 GIMAP7Q8NHV1 300 aa8.81□□□□□ -1
USP54-210ENST00000466048 MTA3Q9BTC8 594 aa8.81□□□□□ -1
USP54-210ENST00000466048 MTFR1LQ9H019 292 aa8.81□□□□□ -1
USP54-210ENST00000466048 GBP3Q9H0R5 595 aa8.81□□□□□ -1
USP54-210ENST00000466048 VEZTQ9HBM0 779 aa8.81□□□□□ -1
USP54-210ENST00000466048 RBM27Q9P2N5 1060 aaKnown RBP8.81□□□□□ -1
USP54-210ENST00000466048 CFAP45Q9UL16 551 aa8.81□□□□□ -1
USP54-210ENST00000466048 NOL7Q9UMY1 257 aaKnown RBP8.81□□□□□ -1
USP54-210ENST00000466048 BTAF1O14981 1849 aa8.81□□□□□ -1
USP54-210ENST00000466048 UBE2HP62256 183 aa8.81□□□□□ -1
USP54-210ENST00000466048 IRX3P78415 501 aaPredicted RBP8.81□□□□□ -1
USP54-210ENST00000466048 WDR78Q5VTH9 848 aa8.81□□□□□ -1
USP54-210ENST00000466048 ZBTB22O15209 634 aa8.81□□□□□ -1
USP54-210ENST00000466048 TOB2Q14106 344 aaPredicted RBP8.81□□□□□ -1
USP54-210ENST00000466048 TBC1D9BQ66K14 1250 aa8.81□□□□□ -1
USP54-210ENST00000466048 MAGEB6Q8N7X4 407 aa8.81□□□□□ -1
USP54-210ENST00000466048 ARHGEF1Q92888 912 aaKnown RBP8.81□□□□□ -1
USP54-210ENST00000466048 CUL5Q93034 780 aa8.81□□□□□ -1
USP54-210ENST00000466048 CEP89Q96ST8 783 aa8.81□□□□□ -1
USP54-210ENST00000466048 PNMA2Q9UL42 364 aa8.81□□□□□ -1
USP54-210ENST00000466048 ZDHHC9Q9Y397 364 aa8.81□□□□□ -1
USP54-210ENST00000466048 PNPLA7Q6ZV29 1317 aa8.81□□□□□ -1
USP54-210ENST00000466048 PCP11498 1178 aaKnown RBP8.81□□□□□ -1
USP54-210ENST00000466048 ZNF445P59923 1031 aa8.81□□□□□ -1
USP54-210ENST00000466048 ESR2Q92731 530 aa8.81□□□□□ -1
USP54-210ENST00000466048 PIH1D3Q9NQM4 214 aaKnown RBP8.81□□□□□ -1
USP54-210ENST00000466048 IQSEC3Q9UPP2 1182 aaPredicted RBP8.81□□□□□ -1
USP54-210ENST00000466048 PRC1O43663 620 aa8.8□□□□□ -1
USP54-210ENST00000466048 CATIPQ7Z7H3 387 aa8.8□□□□□ -1
USP54-210ENST00000466048 NECAB1Q8N987 351 aa8.8□□□□□ -1
USP54-210ENST00000466048 JMYQ8N9B5 988 aa8.8□□□□□ -1
USP54-210ENST00000466048 TAOK3Q9H2K8 898 aa8.8□□□□□ -1
USP54-210ENST00000466048 FGAP02671 866 aa8.8□□□□□ -1
USP54-210ENST00000466048 TXLNAP40222 546 aa8.8□□□□□ -1
USP54-210ENST00000466048 EXOSC10Q01780 885 aaKnown RBP8.8□□□□□ -1
USP54-210ENST00000466048 STK3Q13188 491 aa8.8□□□□□ -1
USP54-210ENST00000466048 MFSD6Q6ZSS7 791 aa8.8□□□□□ -1
USP54-210ENST00000466048 TEKT1Q969V4 418 aa8.8□□□□□ -1
USP54-210ENST00000466048 FSD2A1L4K1 749 aa8.8□□□□□ -1
USP54-210ENST00000466048 RASGRF1Q13972 1273 aa8.8□□□□□ -1
USP54-210ENST00000466048 R3HDM1Q15032 1099 aaKnown RBP8.8□□□□□ -1
USP54-210ENST00000466048 MYH7P12883 1935 aa8.8□□□□□ -1
USP54-210ENST00000466048 TSPY2A6NKD2 308 aa8.8□□□□□ -1
USP54-210ENST00000466048 SCARF1Q14162 830 aa8.8□□□□□ -1
USP54-210ENST00000466048 TMCO3Q6UWJ1 677 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms