RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 FGAP02671 866 aa22.56■■□□□ 1.2
SDF4-205ENST00000465727 SNRPA1P09661 255 aaKnown RBP22.56■■□□□ 1.2
SDF4-205ENST00000465727 BMP6P22004 513 aa22.56■■□□□ 1.2
SDF4-205ENST00000465727 ADKP55263 362 aaKnown RBP22.56■■□□□ 1.2
SDF4-205ENST00000465727 FOXO4P98177 505 aa22.56■■□□□ 1.2
SDF4-205ENST00000465727 MDM2Q00987 491 aaPredicted RBP22.56■■□□□ 1.2
SDF4-205ENST00000465727 PDE4BQ07343 736 aa22.56■■□□□ 1.2
SDF4-205ENST00000465727 SLC39A6Q13433 755 aa22.56■■□□□ 1.2
SDF4-205ENST00000465727 RRP15Q9Y3B9 282 aaKnown RBP22.56■■□□□ 1.2
SDF4-205ENST00000465727 FOXP2O15409 715 aa22.56■■□□□ 1.2
SDF4-205ENST00000465727 CIAO1O76071 339 aa22.56■■□□□ 1.2
SDF4-205ENST00000465727 NOM1Q5C9Z4 860 aaKnown RBP22.56■■□□□ 1.2
SDF4-205ENST00000465727 PLBD2Q8NHP8 589 aa22.56■■□□□ 1.2
SDF4-205ENST00000465727 ANKZF1Q9H8Y5 726 aa22.56■■□□□ 1.2
SDF4-205ENST00000465727 RSPH14Q9UHP6 348 aa22.56■■□□□ 1.2
SDF4-205ENST00000465727 AKR1B15C9JRZ8 316 aaPredicted RBP22.55■■□□□ 1.2
SDF4-205ENST00000465727 KIF5CO60282 957 aa22.55■■□□□ 1.2
SDF4-205ENST00000465727 HAND2P61296 217 aa22.55■■□□□ 1.2
SDF4-205ENST00000465727 GOLGA6L1Q8N7Z2 621 aa22.55■■□□□ 1.2
SDF4-205ENST00000465727 GBP3Q9H0R5 595 aa22.55■■□□□ 1.2
SDF4-205ENST00000465727 ECM29Q5VYK3 1845 aa22.55■■□□□ 1.2
SDF4-205ENST00000465727 H7C1W4 665 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 CDC27P30260 824 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 CT47A1Q5JQC4 288 aaPredicted RBP22.54■■□□□ 1.2
SDF4-205ENST00000465727 TTC39AQ5SRH9 613 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 C10orf67Q8IYJ2 551 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 THEMISQ8N1K5 641 aaPredicted RBP22.54■■□□□ 1.2
SDF4-205ENST00000465727 KRI1Q8N9T8 703 aaKnown RBP22.54■■□□□ 1.2
SDF4-205ENST00000465727 MAN1B1Q9UKM7 699 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 A0A1B0GUL7 405 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 EYA2O00167 538 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 ZNF213O14771 459 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 GCP02774 474 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 TRIM29Q14134 588 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 NR1I3Q14994 352 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 KARSQ15046 597 aaKnown RBP22.54■■□□□ 1.2
SDF4-205ENST00000465727 POSTNQ15063 836 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 MRPL44Q9H9J2 332 aaKnown RBP22.54■■□□□ 1.2
SDF4-205ENST00000465727 PDE11AQ9HCR9 933 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 VPS18Q9P253 973 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 L1RE1Q9UN81 338 aa22.54■■□□□ 1.2
SDF4-205ENST00000465727 ANGEL1Q9UNK9 670 aaKnown RBP22.54■■□□□ 1.2
SDF4-205ENST00000465727 KDM6AO15550 1401 aaPredicted RBP22.54■■□□□ 1.2
SDF4-205ENST00000465727 ABCC12Q96J65 1359 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 METAP2P50579 478 aaKnown RBP eCLIP22.53■■□□□ 1.25e-7■■□□□ 11.7
SDF4-205ENST00000465727 GYS2P54840 703 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 ZNF496Q96IT1 587 aaPredicted RBP22.53■■□□□ 1.2
SDF4-205ENST00000465727 CLIC6Q96NY7 704 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 ADGRG1Q9Y653 693 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 PLEKHG2Q9H7P9 1386 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 A0A1B0GTH6 734 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 ATP5J2-PTCD1G3V325 749 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 PTCD1O75127 700 aaKnown RBP22.53■■□□□ 1.2
SDF4-205ENST00000465727 SARSP49591 514 aaKnown RBP22.53■■□□□ 1.2
SDF4-205ENST00000465727 TRDNQ13061 729 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 PTPN21Q16825 1174 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 APPBP2Q92624 585 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 DESI2Q9BSY9 194 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 MKRN1Q9UHC7 482 aaKnown RBP22.53■■□□□ 1.2
SDF4-205ENST00000465727 LCMT1Q9UIC8 334 aa22.53■■□□□ 1.2
SDF4-205ENST00000465727 MYH7P12883 1935 aa22.52■■□□□ 1.2
SDF4-205ENST00000465727 ERCC5P28715 1186 aaPredicted RBP22.52■■□□□ 1.2
SDF4-205ENST00000465727 MORC3Q14149 939 aa22.52■■□□□ 1.2
SDF4-205ENST00000465727 WASHC4Q2M389 1173 aa22.52■■□□□ 1.2
SDF4-205ENST00000465727 ACBD3Q9H3P7 528 aa22.52■■□□□ 1.2
SDF4-205ENST00000465727 LAMB4A4D0S4 1761 aa22.52■■□□□ 1.2
SDF4-205ENST00000465727 MCM6Q14566 821 aa22.51■■□□□ 1.19
SDF4-205ENST00000465727 KANK3Q6NY19 840 aa22.51■■□□□ 1.19
SDF4-205ENST00000465727 FMR1Q06787 632 aaKnown RBP eCLIP22.51■■□□□ 1.19
SDF4-205ENST00000465727 FAM71BQ8TC56 605 aa22.51■■□□□ 1.19
SDF4-205ENST00000465727 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.51■■□□□ 1.19
SDF4-205ENST00000465727 TRIM66O15016 1216 aa22.5■■□□□ 1.19
SDF4-205ENST00000465727 RASGRP2Q7LDG7 609 aa22.5■■□□□ 1.19
SDF4-205ENST00000465727 TTC5Q8N0Z6 440 aa22.5■■□□□ 1.19
SDF4-205ENST00000465727 CTAGE9A4FU28 777 aa22.5■■□□□ 1.19
SDF4-205ENST00000465727 PLCD1P51178 756 aa22.5■■□□□ 1.19
SDF4-205ENST00000465727 HSP90B2PQ58FF3 399 aa22.5■■□□□ 1.19
SDF4-205ENST00000465727 PPFIBP1Q86W92 1011 aa22.5■■□□□ 1.19
SDF4-205ENST00000465727 RAB11FIP4Q86YS3 637 aa22.5■■□□□ 1.19
SDF4-205ENST00000465727 AIFM3Q96NN9 605 aa22.5■■□□□ 1.19
SDF4-205ENST00000465727 MED4Q9NPJ6 270 aa22.5■■□□□ 1.19
SDF4-205ENST00000465727 STK36Q9NRP7 1315 aa22.49■■□□□ 1.19
SDF4-205ENST00000465727 NOP2P46087 812 aaKnown RBP22.49■■□□□ 1.19
SDF4-205ENST00000465727 PIP4K2BP78356 416 aa22.49■■□□□ 1.19
SDF4-205ENST00000465727 FKBP4Q02790 459 aaKnown RBP eCLIP22.49■■□□□ 1.198e-7■■■■□ 22.5
SDF4-205ENST00000465727 WHAMMP3Q1A5X7 153 aa22.49■■□□□ 1.19
SDF4-205ENST00000465727 CCDC51Q96ER9 411 aa22.49■■□□□ 1.19
SDF4-205ENST00000465727 LZTFL1Q9NQ48 299 aa22.49■■□□□ 1.19
SDF4-205ENST00000465727 TTF2Q9UNY4 1162 aaKnown RBP22.49■■□□□ 1.19
SDF4-205ENST00000465727 SOWAHDA6NJG2 315 aa22.48■■□□□ 1.19
SDF4-205ENST00000465727 ZNF579Q8NAF0 562 aaKnown RBP22.48■■□□□ 1.19
SDF4-205ENST00000465727 PNKPQ96T60 521 aa22.48■■□□□ 1.19
SDF4-205ENST00000465727 MYO1AQ9UBC5 1043 aa22.48■■□□□ 1.19
SDF4-205ENST00000465727 PUF60Q9UHX1 559 aaKnown RBP22.48■■□□□ 1.19
SDF4-205ENST00000465727 TJP1Q07157 1748 aa22.48■■□□□ 1.19
SDF4-205ENST00000465727 SH2B2O14492 632 aaPredicted RBP22.48■■□□□ 1.19
SDF4-205ENST00000465727 IARSP41252 1262 aaKnown RBP22.48■■□□□ 1.19
SDF4-205ENST00000465727 MTF1Q14872 753 aa22.48■■□□□ 1.19
SDF4-205ENST00000465727 HSP90AA4PQ58FG1 418 aa22.48■■□□□ 1.19
SDF4-205ENST00000465727 APOA5Q6Q788 366 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms