RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 C19orf67A6NJJ6 358 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 APBB1O00213 710 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 LMNAP02545 664 aaKnown RBP3.56□□□□□ -1.84
USP40-211ENST00000464956 SNRPA1P09661 255 aaKnown RBP3.56□□□□□ -1.84
USP40-211ENST00000464956 HCLS1P14317 486 aaPredicted RBP3.56□□□□□ -1.84
USP40-211ENST00000464956 CYP2B6P20813 491 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 CCND3P30281 292 aaPredicted RBP3.56□□□□□ -1.84
USP40-211ENST00000464956 TLE2Q04725 743 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 FAM110CQ1W6H9 321 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 SULT6B1Q6IMI4 303 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 FASTKD5Q7L8L6 764 aaKnown RBP3.56□□□□□ -1.84
USP40-211ENST00000464956 RNF135Q8IUD6 432 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 AEBP1Q8IUX7 1158 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 TMEFF1Q8IYR6 380 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 ZNF34Q8IZ26 560 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 NGEFQ8N5V2 710 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 SLC44A5Q8NCS7 719 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 SOCS4Q8WXH5 440 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 NUDT12Q9BQG2 462 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 MXD3Q9BW11 206 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 SEMA4AQ9H3S1 761 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 POLKQ9UBT6 870 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 DDX20Q9UHI6 824 aaKnown RBP3.56□□□□□ -1.84
USP40-211ENST00000464956 GJD2Q9UKL4 321 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 GPR179Q6PRD1 2367 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 C5orf42Q9H799 3197 aa3.56□□□□□ -1.84
USP40-211ENST00000464956 CEMIPQ8WUJ3 1361 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 SPDYE2BA6NHP3 402 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 EIF4E1BA6NMX2 242 aaKnown RBP3.55□□□□□ -1.84
USP40-211ENST00000464956 DCDC2CA8MYV0 355 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 TIMP1P01033 207 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 MYCNP04198 464 aaPredicted RBP3.55□□□□□ -1.84
USP40-211ENST00000464956 SPDYE6P0CI01 402 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 CNGA1P29973 690 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 TNNI2P48788 182 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 RBM5P52756 815 aaKnown RBP eCLIP3.55□□□□□ -1.84
USP40-211ENST00000464956 RABGGTBP53611 331 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 ATXN1P54253 815 aaKnown RBP3.55□□□□□ -1.84
USP40-211ENST00000464956 ZXDAP98168 799 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 SIGLEC14Q08ET2 396 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 LRRC41Q15345 812 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 TMEM67Q5HYA8 995 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 GJC2Q5T442 439 aaPredicted RBP3.55□□□□□ -1.84
USP40-211ENST00000464956 MFSD14CQ5VZR4 134 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 TTLL5Q6EMB2 1281 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 ZNF365Q70YC5 407 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 TMEM199Q8N511 208 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 ARNTL2Q8WYA1 636 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 CELF1Q92879 486 aaKnown RBP3.55□□□□□ -1.84
USP40-211ENST00000464956 ZBTB3Q9H5J0 574 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 CERS4Q9HA82 394 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 LMCD1Q9NZU5 365 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 ANGPTL2Q9UKU9 493 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 CDV3Q9UKY7 258 aaKnown RBP3.55□□□□□ -1.84
USP40-211ENST00000464956 LHX6Q9UPM6 363 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 SLC45A1Q9Y2W3 748 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 PTPRZ1P23471 2315 aaPredicted RBP3.55□□□□□ -1.84
USP40-211ENST00000464956 ZNF318Q5VUA4 2279 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 BDP1A6H8Y1 2624 aa3.55□□□□□ -1.84
USP40-211ENST00000464956 NCOR1O75376 2440 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 BTBD11A6QL63 1104 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 CXCL11O14625 94 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 MAP3K13O43283 966 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 PQBP1O60828 265 aaKnown RBP3.54□□□□□ -1.84
USP40-211ENST00000464956 FGBP02675 491 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 PROS1P07225 676 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 CA3P07451 260 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 ACRP10323 421 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 MYOGP15173 224 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 ATP2B4P23634 1241 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 ADCYAP1R1P41586 468 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 RPS8P62241 208 aaKnown RBP3.54□□□□□ -1.84
USP40-211ENST00000464956 GRB10Q13322 594 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 CFAP100Q494V2 611 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 DCAF15Q66K64 600 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 MFSD5Q6N075 450 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 GPAT2Q6NUI2 795 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 GIGYF2Q6Y7W6 1299 aaKnown RBP3.54□□□□□ -1.84
USP40-211ENST00000464956 PIK3R5Q8WYR1 880 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 RTKNQ9BST9 563 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 COA1Q9GZY4 146 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 PNMA3Q9UL41 463 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 ZMIZ1Q9ULJ6 1067 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 SLC4A7Q9Y6M7 1214 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 CDH23Q9H251 3354 aa3.54□□□□□ -1.84
USP40-211ENST00000464956 CFAP47Q6ZTR5 3102 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 XDHP47989 1333 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 POLR2AP24928 1970 aaKnown RBP3.53□□□□□ -1.84
USP40-211ENST00000464956 LOC105371045A0A1W2PR82 267 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 EPOPA6NHQ4 379 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 H3BQ06 376 aaPredicted RBP3.53□□□□□ -1.84
USP40-211ENST00000464956 TAF4O00268 1085 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 CSF2RAP15509 400 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 ATP2A2P16615 1042 aaKnown RBP3.53□□□□□ -1.84
USP40-211ENST00000464956 RGS2P41220 211 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 GCLCP48506 637 aaPredicted RBP3.53□□□□□ -1.84
USP40-211ENST00000464956 GTF2IP78347 998 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 RING1Q06587 406 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 MOGSQ13724 837 aa3.53□□□□□ -1.84
USP40-211ENST00000464956 GADL1Q6ZQY3 521 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms