RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 SERPINA10Q9UK55 444 aa11.72□□□□□ -0.53
PTPRD-207ENST00000463477 TTF2Q9UNY4 1162 aaKnown RBP11.72□□□□□ -0.53
PTPRD-207ENST00000463477 SMC3Q9UQE7 1217 aa11.72□□□□□ -0.53
PTPRD-207ENST00000463477 ASTN2O75129 1339 aaPredicted RBP11.72□□□□□ -0.53
PTPRD-207ENST00000463477 F8W031 263 aaPredicted RBP11.71□□□□□ -0.53
PTPRD-207ENST00000463477 NASPP49321 788 aaPredicted RBP11.71□□□□□ -0.53
PTPRD-207ENST00000463477 CFAP100Q494V2 611 aa11.71□□□□□ -0.53
PTPRD-207ENST00000463477 LRSAM1Q6UWE0 723 aa11.71□□□□□ -0.53
PTPRD-207ENST00000463477 NOL8Q76FK4 1167 aaKnown RBP11.71□□□□□ -0.53
PTPRD-207ENST00000463477 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.71□□□□□ -0.53
PTPRD-207ENST00000463477 PRMT6Q96LA8 375 aaPredicted RBP11.71□□□□□ -0.53
PTPRD-207ENST00000463477 PDS5AQ29RF7 1337 aaKnown RBP11.71□□□□□ -0.53
PTPRD-207ENST00000463477 SPDYE2BA6NHP3 402 aa11.71□□□□□ -0.54
PTPRD-207ENST00000463477 STX6O43752 255 aa11.71□□□□□ -0.54
PTPRD-207ENST00000463477 SPDYE6P0CI01 402 aa11.71□□□□□ -0.54
PTPRD-207ENST00000463477 GRIK5Q16478 980 aa11.71□□□□□ -0.54
PTPRD-207ENST00000463477 RTN4Q9NQC3 1192 aaKnown RBP11.71□□□□□ -0.54
PTPRD-207ENST00000463477 SALL1Q9NSC2 1324 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 POLR2AP24928 1970 aaKnown RBP11.7□□□□□ -0.54
PTPRD-207ENST00000463477 MYO1BO43795 1136 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 CELF2O95319 508 aaKnown RBP11.7□□□□□ -0.54
PTPRD-207ENST00000463477 F13A1P00488 732 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 NCLP19338 710 aaKnown RBP11.7□□□□□ -0.54
PTPRD-207ENST00000463477 SYT1P21579 422 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 RASGRF1Q13972 1273 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 GORABQ5T7V8 394 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 BLOC1S2Q6QNY1 142 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 KBTBD3Q8NAB2 608 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 ANP32BQ92688 251 aaKnown RBP11.7□□□□□ -0.54
PTPRD-207ENST00000463477 KLRG1Q96E93 195 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 TMEM63CQ9P1W3 806 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 U3KPZ7 1027 aaPredicted RBP11.7□□□□□ -0.54
PTPRD-207ENST00000463477 MYH15Q9Y2K3 1946 aa11.7□□□□□ -0.54
PTPRD-207ENST00000463477 RPS6KB1P23443 525 aa11.69□□□□□ -0.54
PTPRD-207ENST00000463477 ARID4AP29374 1257 aaPredicted RBP11.69□□□□□ -0.54
PTPRD-207ENST00000463477 CLCN1P35523 988 aa11.69□□□□□ -0.54
PTPRD-207ENST00000463477 CRKP46108 304 aa11.69□□□□□ -0.54
PTPRD-207ENST00000463477 RBM5P52756 815 aaKnown RBP eCLIP11.69□□□□□ -0.54
PTPRD-207ENST00000463477 CSPP1Q1MSJ5 1256 aa11.69□□□□□ -0.54
PTPRD-207ENST00000463477 ZNF512BQ96KM6 892 aaPredicted RBP11.69□□□□□ -0.54
PTPRD-207ENST00000463477 DBNDD2Q9BQY9 259 aa11.69□□□□□ -0.54
PTPRD-207ENST00000463477 MAST3O60307 1309 aa11.69□□□□□ -0.54
PTPRD-207ENST00000463477 RASSF10A6NK89 507 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 ADM5C9JUS6 153 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 LARGE1O95461 756 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 UQCRFS1P1P0C7P4 283 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 PDCP20941 246 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 MCMDC2Q4G0Z9 681 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 HS1BP3Q53T59 392 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 CCDC158Q5M9N0 1113 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 HHIPL2Q6UWX4 724 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 DLK2Q6UY11 383 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 ZNF589Q86UQ0 364 aaPredicted RBP11.68□□□□□ -0.54
PTPRD-207ENST00000463477 APOBEC3FQ8IUX4 373 aaKnown RBP11.68□□□□□ -0.54
PTPRD-207ENST00000463477 TEKT1Q969V4 418 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 ZDHHC15Q96MV8 337 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 HELLSQ9NRZ9 838 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 PCDHAC2Q9Y5I4 1007 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 TLL2Q9Y6L7 1015 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 LDHBP07195 334 aaKnown RBP11.68□□□□□ -0.54
PTPRD-207ENST00000463477 GJB2P29033 226 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 ST3GAL1Q11201 340 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 ME3Q16798 604 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 DEFB115Q30KQ5 88 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 SAPCD2Q86UD0 394 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 SPATA5Q8NB90 893 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 HHIPL1Q96JK4 782 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 PDLIM2Q96JY6 352 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 RRAGDQ9NQL2 400 aaPredicted RBP11.68□□□□□ -0.54
PTPRD-207ENST00000463477 MTMR6Q9Y217 621 aa11.68□□□□□ -0.54
PTPRD-207ENST00000463477 COL1A1P02452 1464 aaPredicted RBP11.67□□□□□ -0.54
PTPRD-207ENST00000463477 AKAP11Q9UKA4 1901 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 CPA1P15085 419 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 PRDX5P30044 214 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 SPTY2D1Q68D10 685 aaPredicted RBP11.67□□□□□ -0.54
PTPRD-207ENST00000463477 APOBEC3HQ6NTF7 200 aaKnown RBP11.67□□□□□ -0.54
PTPRD-207ENST00000463477 CCDC83Q8IWF9 413 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 C2orf69Q8N8R5 385 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 JMYQ8N9B5 988 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 TRIM44Q96DX7 344 aaPredicted RBP11.67□□□□□ -0.54
PTPRD-207ENST00000463477 CDCA5Q96FF9 252 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 DSCC1Q9BVC3 393 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 ZNF408Q9H9D4 720 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 TPCN1Q9ULQ1 816 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 ABT1Q9ULW3 272 aaKnown RBP11.67□□□□□ -0.54
PTPRD-207ENST00000463477 ARAP2Q8WZ64 1704 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 PCNTO95613 3336 aa11.67□□□□□ -0.54
PTPRD-207ENST00000463477 LETM1O95202 739 aaPredicted RBP11.66□□□□□ -0.54
PTPRD-207ENST00000463477 HMGB1P09429 215 aaKnown RBP11.66□□□□□ -0.54
PTPRD-207ENST00000463477 MCAMP43121 646 aa11.66□□□□□ -0.54
PTPRD-207ENST00000463477 UBE2HP62256 183 aa11.66□□□□□ -0.54
PTPRD-207ENST00000463477 SPDYE2Q495Y8 402 aa11.66□□□□□ -0.54
PTPRD-207ENST00000463477 FOXD4L5Q5VV16 416 aaPredicted RBP11.66□□□□□ -0.54
PTPRD-207ENST00000463477 FOXD4L4Q8WXT5 416 aaPredicted RBP11.66□□□□□ -0.54
PTPRD-207ENST00000463477 FAM163AQ96GL9 167 aaPredicted RBP11.66□□□□□ -0.54
PTPRD-207ENST00000463477 RBSNQ9H1K0 784 aa11.66□□□□□ -0.54
PTPRD-207ENST00000463477 DEFB129Q9H1M3 183 aa11.66□□□□□ -0.54
PTPRD-207ENST00000463477 TDRD3Q9H7E2 651 aaKnown RBP11.66□□□□□ -0.54
PTPRD-207ENST00000463477 GBA2Q9HCG7 927 aaPredicted RBP11.66□□□□□ -0.54
PTPRD-207ENST00000463477 PAG1Q9NWQ8 432 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms