RNA–Protein interactions for RNA: ENST00000462673.1

USP4-207, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 709 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-207ENST00000462673 FOXP4Q8IVH2 680 aaPredicted RBP9.29□□□□□ -0.92
USP4-207ENST00000462673 RUFY2Q8WXA3 655 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 APPBP2Q92624 585 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 GLIS2Q9BZE0 524 aaPredicted RBP9.29□□□□□ -0.92
USP4-207ENST00000462673 NACAP1Q9BZK3 213 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 ZNF408Q9H9D4 720 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 RRAGDQ9NQL2 400 aaPredicted RBP9.29□□□□□ -0.92
USP4-207ENST00000462673 HELLSQ9NRZ9 838 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 ATP8A2Q9NTI2 1148 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 PI4KBQ9UBF8 816 aa9.29□□□□□ -0.92
USP4-207ENST00000462673 ABT1Q9ULW3 272 aaKnown RBP9.29□□□□□ -0.92
USP4-207ENST00000462673 FSD2A1L4K1 749 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 CLCN1P35523 988 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 ECE1P42892 770 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 REM2Q8IYK8 340 aaPredicted RBP9.28□□□□□ -0.92
USP4-207ENST00000462673 CCDC102AQ96A19 550 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 CDCA5Q96FF9 252 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 HHIPL1Q96JK4 782 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 NAP1L5Q96NT1 182 aaPredicted RBP9.28□□□□□ -0.92
USP4-207ENST00000462673 ZNF287Q9HBT7 754 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 GBA2Q9HCG7 927 aaPredicted RBP9.28□□□□□ -0.92
USP4-207ENST00000462673 CHMP5Q9NZZ3 219 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 NDUFB9Q9Y6M9 179 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 PASKQ96RG2 1323 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 SALL3Q9BXA9 1300 aa9.28□□□□□ -0.92
USP4-207ENST00000462673 RPAP1Q9BWH6 1393 aaPredicted RBP9.27□□□□□ -0.93
USP4-207ENST00000462673 RRP9O43818 475 aaKnown RBP9.27□□□□□ -0.93
USP4-207ENST00000462673 APPP05067 770 aa9.27□□□□□ -0.93
USP4-207ENST00000462673 POLR3DP05423 398 aaPredicted RBP9.27□□□□□ -0.93
USP4-207ENST00000462673 SLC3A2P08195 630 aaKnown RBP9.27□□□□□ -0.93
USP4-207ENST00000462673 MRE11P49959 708 aa9.27□□□□□ -0.93
USP4-207ENST00000462673 TCP10Q12799 353 aa9.27□□□□□ -0.93
USP4-207ENST00000462673 PICALMQ13492 652 aa9.27□□□□□ -0.93
USP4-207ENST00000462673 DEFB115Q30KQ5 88 aa9.27□□□□□ -0.93
USP4-207ENST00000462673 MCMDC2Q4G0Z9 681 aa9.27□□□□□ -0.93
USP4-207ENST00000462673 GIMAP6Q6P9H5 292 aa9.27□□□□□ -0.93
USP4-207ENST00000462673 MIGA1Q8NAN2 632 aa9.27□□□□□ -0.93
USP4-207ENST00000462673 TGFBRAP1Q8WUH2 860 aa9.27□□□□□ -0.93
USP4-207ENST00000462673 DIAPH3Q9NSV4 1193 aa9.27□□□□□ -0.93
USP4-207ENST00000462673 PATL2C9JE40 543 aaKnown RBP9.26□□□□□ -0.93
USP4-207ENST00000462673 ADM5C9JUS6 153 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 TBC1D12O60347 775 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 SDSP20132 328 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 MCM4P33991 863 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 RHBDL3P58872 404 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 TTC22Q5TAA0 569 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 TSHZ3Q63HK5 1081 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 HSCBQ8IWL3 235 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 ANKRD13AQ8IZ07 590 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 CRACR2BQ8N4Y2 399 aaPredicted RBP9.26□□□□□ -0.93
USP4-207ENST00000462673 OTUD7AQ8TE49 926 aaPredicted RBP9.26□□□□□ -0.93
USP4-207ENST00000462673 SH3RF3Q8TEJ3 882 aaPredicted RBP9.26□□□□□ -0.93
USP4-207ENST00000462673 SLC10A4Q96EP9 437 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 CSRNP1Q96S65 589 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 ZNF341Q9BYN7 854 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 TBC1D2Q9BYX2 928 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 OSBPL5Q9H0X9 879 aaPredicted RBP9.26□□□□□ -0.93
USP4-207ENST00000462673 HERC5Q9UII4 1024 aaKnown RBP9.26□□□□□ -0.93
USP4-207ENST00000462673 CSADQ9Y600 493 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 SLC4A4Q9Y6R1 1079 aa9.26□□□□□ -0.93
USP4-207ENST00000462673 RFX7Q2KHR2 1363 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 TCRBV5S4A2TA0A5A2 114 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 TRAF5O00463 557 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 WDHD1O75717 1129 aaPredicted RBP9.25□□□□□ -0.93
USP4-207ENST00000462673 HSP90AA1P07900 732 aaKnown RBP9.25□□□□□ -0.93
USP4-207ENST00000462673 HUNKP57058 714 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 INHBEP58166 350 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 MAP3K9P80192 1104 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 MAP3K11Q16584 847 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 CST9Q5W186 159 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 KIAA1211Q6ZU35 1233 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 EDC3Q96F86 508 aaKnown RBP9.25□□□□□ -0.93
USP4-207ENST00000462673 TMEM39BQ9GZU3 492 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 GINM1Q9NU53 330 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 MCM9Q9NXL9 1143 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 ANGEL1Q9UNK9 670 aaKnown RBP9.25□□□□□ -0.93
USP4-207ENST00000462673 PCDHAC2Q9Y5I4 1007 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 TLL2Q9Y6L7 1015 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 ASTN2O75129 1339 aaPredicted RBP9.25□□□□□ -0.93
USP4-207ENST00000462673 AKAP11Q9UKA4 1901 aa9.25□□□□□ -0.93
USP4-207ENST00000462673 MBD4O95243 580 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 NT5C2P49902 561 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 ZNF157P51786 506 aaPredicted RBP9.24□□□□□ -0.93
USP4-207ENST00000462673 CACNB3P54284 484 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 BMP2KLQ5H9B9 411 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 ZMYM1Q5SVZ6 1142 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 NBPF12Q5TAG4 269 aaPredicted RBP9.24□□□□□ -0.93
USP4-207ENST00000462673 RGMBQ6NW40 437 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 PAXIP1Q6ZW49 1069 aaPredicted RBP9.24□□□□□ -0.93
USP4-207ENST00000462673 SAPCD2Q86UD0 394 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 ZNF384Q8TF68 577 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 PKNOX2Q96KN3 472 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 STRBPQ96SI9 672 aaKnown RBP9.24□□□□□ -0.93
USP4-207ENST00000462673 RIOK1Q9BRS2 568 aaKnown RBP9.24□□□□□ -0.93
USP4-207ENST00000462673 PUS7LQ9H0K6 701 aaKnown RBP9.24□□□□□ -0.93
USP4-207ENST00000462673 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.24□□□□□ -0.93
USP4-207ENST00000462673 ARPP21Q9UBL0 812 aaPredicted RBP9.24□□□□□ -0.93
USP4-207ENST00000462673 FAM198AQ9UFP1 575 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 CTNNA3Q9UI47 895 aa9.24□□□□□ -0.93
USP4-207ENST00000462673 CIZ1Q9ULV3 898 aaPredicted RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms