RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 MYH1P12882 1939 aa27.61■■■□□ 2.01
CCDC28B-203ENST00000461819 ZFPM1Q8IX07 1006 aa27.61■■■□□ 2.01
CCDC28B-203ENST00000461819 NAV1Q8NEY1 1877 aa27.61■■■□□ 2.01
CCDC28B-203ENST00000461819 ECE1P42892 770 aa27.6■■■□□ 2.01
CCDC28B-203ENST00000461819 LRRFIP1Q32MZ4 808 aaKnown RBP27.6■■■□□ 2.01
CCDC28B-203ENST00000461819 CYP4F22Q6NT55 531 aa27.6■■■□□ 2.01
CCDC28B-203ENST00000461819 PLEKHM2Q8IWE5 1019 aa27.6■■■□□ 2.01
CCDC28B-203ENST00000461819 TGFBRAP1Q8WUH2 860 aa27.6■■■□□ 2.01
CCDC28B-203ENST00000461819 FSD1Q9BTV5 496 aa27.6■■■□□ 2.01
CCDC28B-203ENST00000461819 NPM3O75607 178 aaKnown RBP27.59■■■□□ 2.01
CCDC28B-203ENST00000461819 IREB2P48200 963 aaKnown RBP27.59■■■□□ 2.01
CCDC28B-203ENST00000461819 UBE3CQ15386 1083 aa27.59■■■□□ 2.01
CCDC28B-203ENST00000461819 SLFNL1Q499Z3 407 aa27.59■■■□□ 2.01
CCDC28B-203ENST00000461819 DCAF15Q66K64 600 aa27.59■■■□□ 2.01
CCDC28B-203ENST00000461819 RGMBQ6NW40 437 aa27.59■■■□□ 2.01
CCDC28B-203ENST00000461819 CAPNS2Q96L46 248 aa27.59■■■□□ 2.01
CCDC28B-203ENST00000461819 CSRNP1Q96S65 589 aa27.59■■■□□ 2.01
CCDC28B-203ENST00000461819 VEGFBP49765 207 aa27.58■■■□□ 2.01
CCDC28B-203ENST00000461819 ZNF157P51786 506 aaPredicted RBP27.58■■■□□ 2.01
CCDC28B-203ENST00000461819 CENPQQ7L2Z9 268 aaPredicted RBP27.58■■■□□ 2.01
CCDC28B-203ENST00000461819 MAPKAPK5Q8IW41 473 aa27.58■■■□□ 2.01
CCDC28B-203ENST00000461819 CCDC136Q96JN2 1154 aa27.58■■■□□ 2.01
CCDC28B-203ENST00000461819 RIOK1Q9BRS2 568 aaKnown RBP27.58■■■□□ 2.01
CCDC28B-203ENST00000461819 OSBPL5Q9H0X9 879 aaPredicted RBP27.58■■■□□ 2.01
CCDC28B-203ENST00000461819 COL2A1P02458 1487 aaPredicted RBP27.57■■■□□ 2
CCDC28B-203ENST00000461819 ZFYP08048 801 aaPredicted RBP27.57■■■□□ 2
CCDC28B-203ENST00000461819 USP5P45974 858 aa27.57■■■□□ 2
CCDC28B-203ENST00000461819 OSBPL3Q9H4L5 887 aa27.57■■■□□ 2
CCDC28B-203ENST00000461819 FLT1P17948 1338 aa27.57■■■□□ 2
CCDC28B-203ENST00000461819 USP2O75604 605 aaPredicted RBP27.56■■■□□ 2
CCDC28B-203ENST00000461819 CHGBP05060 677 aa27.56■■■□□ 2
CCDC28B-203ENST00000461819 MAP3K11Q16584 847 aa27.56■■■□□ 2
CCDC28B-203ENST00000461819 EVI5LQ96CN4 794 aa27.56■■■□□ 2
CCDC28B-203ENST00000461819 CRNKL1Q9BZJ0 848 aaKnown RBP27.56■■■□□ 2
CCDC28B-203ENST00000461819 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.56■■■□□ 2
CCDC28B-203ENST00000461819 WDR33Q9C0J8 1336 aaKnown RBP27.56■■■□□ 2
CCDC28B-203ENST00000461819 DDTLA6NHG4 134 aaPredicted RBP27.55■■■□□ 2
CCDC28B-203ENST00000461819 TRIM6-TRIM34B2RNG4 842 aa27.55■■■□□ 2
CCDC28B-203ENST00000461819 RNF113AO15541 343 aaKnown RBP27.55■■■□□ 2
CCDC28B-203ENST00000461819 MBD4O95243 580 aa27.55■■■□□ 2
CCDC28B-203ENST00000461819 PDE4AP27815 886 aa27.55■■■□□ 2
CCDC28B-203ENST00000461819 MIGA2Q7L4E1 593 aa27.55■■■□□ 2
CCDC28B-203ENST00000461819 SH3BP5LQ7L8J4 393 aa27.55■■■□□ 2
CCDC28B-203ENST00000461819 LCORLQ8N3X6 602 aa27.55■■■□□ 2
CCDC28B-203ENST00000461819 AIDAQ96BJ3 306 aa27.55■■■□□ 2
CCDC28B-203ENST00000461819 ATRNL1Q5VV63 1379 aa27.55■■■□□ 2
CCDC28B-203ENST00000461819 THSD7BQ9C0I4 1608 aa27.55■■■□□ 2
CCDC28B-203ENST00000461819 LDLRAD1Q5T700 205 aa27.54■■■□□ 2
CCDC28B-203ENST00000461819 ZNF341Q9BYN7 854 aa27.54■■■□□ 2
CCDC28B-203ENST00000461819 ARMT1Q9H993 441 aa27.54■■■□□ 2
CCDC28B-203ENST00000461819 DDX60LQ5H9U9 1706 aaKnown RBP27.53■■■□□ 2
CCDC28B-203ENST00000461819 ANKRD13AQ8IZ07 590 aa27.53■■■□□ 2
CCDC28B-203ENST00000461819 APPBP2Q92624 585 aa27.53■■■□□ 2
CCDC28B-203ENST00000461819 CCDC102AQ96A19 550 aa27.53■■■□□ 2
CCDC28B-203ENST00000461819 SIPA1L1O43166 1804 aa27.53■■■□□ 2
CCDC28B-203ENST00000461819 RILPL2Q969X0 211 aa27.52■■■□□ 2
CCDC28B-203ENST00000461819 WRNIP1Q96S55 665 aa27.52■■■□□ 2
CCDC28B-203ENST00000461819 DHX36Q9H2U1 1008 aaKnown RBP27.52■■■□□ 2
CCDC28B-203ENST00000461819 SAP30BPQ9UHR5 308 aaKnown RBP27.52■■■□□ 2
CCDC28B-203ENST00000461819 BAZ2AQ9UIF9 1905 aaKnown RBP27.51■■■□□ 2
CCDC28B-203ENST00000461819 UNCXA6NJT0 531 aa27.51■■□□□ 1.99
CCDC28B-203ENST00000461819 SLC10A3P09131 477 aa27.51■■□□□ 1.99
CCDC28B-203ENST00000461819 RASAL3Q86YV0 1011 aa27.51■■□□□ 1.99
CCDC28B-203ENST00000461819 DDX55Q8NHQ9 600 aaKnown RBP eCLIP27.51■■□□□ 1.992e-6■□□□□ 8.3
CCDC28B-203ENST00000461819 CLMNQ96JQ2 1002 aa27.51■■□□□ 1.99
CCDC28B-203ENST00000461819 PUS7LQ9H0K6 701 aaKnown RBP27.51■■□□□ 1.99
CCDC28B-203ENST00000461819 CSADQ9Y600 493 aa27.51■■□□□ 1.99
CCDC28B-203ENST00000461819 SLC10A4Q96EP9 437 aa27.5■■□□□ 1.99
CCDC28B-203ENST00000461819 PALD1Q9ULE6 856 aa27.5■■□□□ 1.99
CCDC28B-203ENST00000461819 AOC2O75106 756 aa27.49■■□□□ 1.99
CCDC28B-203ENST00000461819 MAP3K9P80192 1104 aa27.49■■□□□ 1.99
CCDC28B-203ENST00000461819 NOGQ13253 232 aa27.49■■□□□ 1.99
CCDC28B-203ENST00000461819 SDR42E1Q8WUS8 393 aa27.49■■□□□ 1.99
CCDC28B-203ENST00000461819 OSBP2Q969R2 916 aa27.49■■□□□ 1.99
CCDC28B-203ENST00000461819 FAM155AB1AL88 458 aaPredicted RBP27.48■■□□□ 1.99
CCDC28B-203ENST00000461819 HLA-DOAP06340 250 aa27.48■■□□□ 1.99
CCDC28B-203ENST00000461819 VGLL4Q14135 290 aa27.48■■□□□ 1.99
CCDC28B-203ENST00000461819 SLC4A8Q2Y0W8 1093 aa27.48■■□□□ 1.99
CCDC28B-203ENST00000461819 PI4KBQ9UBF8 816 aa27.48■■□□□ 1.99
CCDC28B-203ENST00000461819 DOCK1Q14185 1865 aa27.48■■□□□ 1.99
CCDC28B-203ENST00000461819 ATAD5Q96QE3 1844 aa27.47■■□□□ 1.99
CCDC28B-203ENST00000461819 ERICH6BQ5W0A0 696 aa27.47■■□□□ 1.99
CCDC28B-203ENST00000461819 PPP1R3FQ6ZSY5 799 aaPredicted RBP27.47■■□□□ 1.99
CCDC28B-203ENST00000461819 JMYQ8N9B5 988 aa27.47■■□□□ 1.99
CCDC28B-203ENST00000461819 TRIM34Q9BYJ4 488 aa27.47■■□□□ 1.99
CCDC28B-203ENST00000461819 ELP3Q9H9T3 547 aa27.47■■□□□ 1.99
CCDC28B-203ENST00000461819 XPO5Q9HAV4 1204 aaKnown RBP eCLIP27.47■■□□□ 1.99
CCDC28B-203ENST00000461819 SLC4A4Q9Y6R1 1079 aa27.47■■□□□ 1.99
CCDC28B-203ENST00000461819 M0R2C6 588 aa27.46■■□□□ 1.99
CCDC28B-203ENST00000461819 PRKAB2O43741 272 aa27.46■■□□□ 1.99
CCDC28B-203ENST00000461819 CRACR2BQ8N4Y2 399 aaPredicted RBP27.46■■□□□ 1.99
CCDC28B-203ENST00000461819 ZKSCAN4Q969J2 545 aaPredicted RBP27.46■■□□□ 1.99
CCDC28B-203ENST00000461819 DDRGK1Q96HY6 314 aa27.46■■□□□ 1.99
CCDC28B-203ENST00000461819 FAM196BA6NMK8 535 aa27.45■■□□□ 1.98
CCDC28B-203ENST00000461819 GPAA1O43292 621 aa27.45■■□□□ 1.98
CCDC28B-203ENST00000461819 MAP2K2P36507 400 aa27.45■■□□□ 1.98
CCDC28B-203ENST00000461819 MKRN3Q13064 507 aaKnown RBP27.45■■□□□ 1.98
CCDC28B-203ENST00000461819 ZMYM1Q5SVZ6 1142 aa27.45■■□□□ 1.98
CCDC28B-203ENST00000461819 TTC22Q5TAA0 569 aa27.45■■□□□ 1.98
CCDC28B-203ENST00000461819 ATP8A2Q9NTI2 1148 aa27.45■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms