RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ADGRA1Q86SQ6 560 aa14.37□□□□□ -0.11
VPS52-213ENST00000461743 TEX11Q8IYF3 940 aa14.37□□□□□ -0.11
VPS52-213ENST00000461743 ANKRD13AQ8IZ07 590 aa14.37□□□□□ -0.11
VPS52-213ENST00000461743 AATFQ9NY61 560 aaKnown RBP eCLIP14.37□□□□□ -0.11
VPS52-213ENST00000461743 FAM155AB1AL88 458 aaPredicted RBP14.36□□□□□ -0.11
VPS52-213ENST00000461743 ZBTB48P10074 688 aaPredicted RBP14.36□□□□□ -0.11
VPS52-213ENST00000461743 MAP2K1Q02750 393 aaPredicted RBP14.36□□□□□ -0.11
VPS52-213ENST00000461743 LRRFIP1Q32MZ4 808 aaKnown RBP14.36□□□□□ -0.11
VPS52-213ENST00000461743 SLC9C2Q5TAH2 1124 aa14.36□□□□□ -0.11
VPS52-213ENST00000461743 CDAN1Q8IWY9 1227 aa14.36□□□□□ -0.11
VPS52-213ENST00000461743 PI4K2BQ8TCG2 481 aa14.36□□□□□ -0.11
VPS52-213ENST00000461743 ZNF341Q9BYN7 854 aa14.36□□□□□ -0.11
VPS52-213ENST00000461743 OSBPL5Q9H0X9 879 aaPredicted RBP14.36□□□□□ -0.11
VPS52-213ENST00000461743 BCL11AQ9H165 835 aa14.36□□□□□ -0.11
VPS52-213ENST00000461743 STAP2Q9UGK3 403 aa14.36□□□□□ -0.11
VPS52-213ENST00000461743 TCRBV5S4A2TA0A5A2 114 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 UBE2Q2LH0YL09 131 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 USP2O75604 605 aaPredicted RBP14.35□□□□□ -0.11
VPS52-213ENST00000461743 ADD2P35612 726 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 NUCB1Q02818 461 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 TCP10Q12799 353 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 PICALMQ13492 652 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 UBE3CQ15386 1083 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 MOB2Q70IA6 237 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 TICAM2Q86XR7 235 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 KBTBD3Q8NAB2 608 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.35□□□□□ -0.11
VPS52-213ENST00000461743 SH3RF3Q8TEJ3 882 aaPredicted RBP14.35□□□□□ -0.11
VPS52-213ENST00000461743 CSRNP1Q96S65 589 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 DHX36Q9H2U1 1008 aaKnown RBP14.35□□□□□ -0.11
VPS52-213ENST00000461743 DDX4Q9NQI0 724 aaKnown RBP14.35□□□□□ -0.11
VPS52-213ENST00000461743 FLT1P17948 1338 aa14.35□□□□□ -0.11
VPS52-213ENST00000461743 CA12O43570 354 aa14.34□□□□□ -0.11
VPS52-213ENST00000461743 IGHDP01880 384 aa14.34□□□□□ -0.11
VPS52-213ENST00000461743 ZFYP08048 801 aaPredicted RBP14.34□□□□□ -0.11
VPS52-213ENST00000461743 IRX6P78412 446 aaPredicted RBP14.34□□□□□ -0.11
VPS52-213ENST00000461743 PRKG1Q13976 671 aa14.34□□□□□ -0.11
VPS52-213ENST00000461743 CHD1LQ86WJ1 897 aa14.34□□□□□ -0.11
VPS52-213ENST00000461743 RIOK1Q9BRS2 568 aaKnown RBP14.34□□□□□ -0.11
VPS52-213ENST00000461743 CSADQ9Y600 493 aa14.34□□□□□ -0.11
VPS52-213ENST00000461743 ZNF532Q9HCE3 1301 aa14.34□□□□□ -0.11
VPS52-213ENST00000461743 LOC285556D6RIA3 1793 aa14.34□□□□□ -0.11
VPS52-213ENST00000461743 MAGEB6P1A0A0J9YX57 407 aa14.33□□□□□ -0.12
VPS52-213ENST00000461743 TBC1D12O60347 775 aa14.33□□□□□ -0.12
VPS52-213ENST00000461743 MAP3K9P80192 1104 aa14.33□□□□□ -0.12
VPS52-213ENST00000461743 MAP3K10Q02779 954 aa14.33□□□□□ -0.12
VPS52-213ENST00000461743 ZSCAN29Q8IWY8 852 aaPredicted RBP14.33□□□□□ -0.12
VPS52-213ENST00000461743 EDC3Q96F86 508 aaKnown RBP14.33□□□□□ -0.12
VPS52-213ENST00000461743 WRNIP1Q96S55 665 aa14.33□□□□□ -0.12
VPS52-213ENST00000461743 ZNF112Q9UJU3 913 aa14.33□□□□□ -0.12
VPS52-213ENST00000461743 TAOK2Q9UL54 1235 aa14.33□□□□□ -0.12
VPS52-213ENST00000461743 AOC2O75106 756 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 PDE1AP54750 535 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 GRM1Q13255 1194 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 VGLL4Q14135 290 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 NOL9Q5SY16 702 aaKnown RBP14.32□□□□□ -0.12
VPS52-213ENST00000461743 SPRYD7Q5W111 196 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 TSHZ3Q63HK5 1081 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 MIGA1Q8NAN2 632 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 OTUD7AQ8TE49 926 aaPredicted RBP14.32□□□□□ -0.12
VPS52-213ENST00000461743 AIDAQ96BJ3 306 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 SLC10A4Q96EP9 437 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 WNK4Q96J92 1243 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 CRNKL1Q9BZJ0 848 aaKnown RBP14.32□□□□□ -0.12
VPS52-213ENST00000461743 LNPKQ9C0E8 428 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 OSBPL3Q9H4L5 887 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 WBP1LQ9NX94 342 aa14.32□□□□□ -0.12
VPS52-213ENST00000461743 HERC5Q9UII4 1024 aaKnown RBP14.32□□□□□ -0.12
VPS52-213ENST00000461743 LAMA4Q16363 1823 aa14.31□□□□□ -0.12
VPS52-213ENST00000461743 DDTLA6NHG4 134 aaPredicted RBP14.31□□□□□ -0.12
VPS52-213ENST00000461743 HSPA1AP0DMV8 641 aaKnown RBP14.31□□□□□ -0.12
VPS52-213ENST00000461743 HSPA1BP0DMV9 641 aaKnown RBP14.31□□□□□ -0.12
VPS52-213ENST00000461743 DYNLL1P63167 89 aaKnown RBP14.31□□□□□ -0.12
VPS52-213ENST00000461743 SREBF2Q12772 1141 aa14.31□□□□□ -0.12
VPS52-213ENST00000461743 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.31□□□□□ -0.12
VPS52-213ENST00000461743 SH3BP5LQ7L8J4 393 aa14.31□□□□□ -0.12
VPS52-213ENST00000461743 ZFPM1Q8IX07 1006 aa14.31□□□□□ -0.12
VPS52-213ENST00000461743 TGFBRAP1Q8WUH2 860 aa14.31□□□□□ -0.12
VPS52-213ENST00000461743 BEGAINQ9BUH8 593 aa14.31□□□□□ -0.12
VPS52-213ENST00000461743 SAGE1Q9NXZ1 904 aa14.31□□□□□ -0.12
VPS52-213ENST00000461743 PI4KBQ9UBF8 816 aa14.31□□□□□ -0.12
VPS52-213ENST00000461743 FZD1Q9UP38 647 aa14.31□□□□□ -0.12
VPS52-213ENST00000461743 MANSC4A6NHS7 340 aaPredicted RBP14.3□□□□□ -0.12
VPS52-213ENST00000461743 SPDYE5A6NIY4 337 aa14.3□□□□□ -0.12
VPS52-213ENST00000461743 HLA-DOAP06340 250 aa14.3□□□□□ -0.12
VPS52-213ENST00000461743 USP5P45974 858 aa14.3□□□□□ -0.12
VPS52-213ENST00000461743 B4GALNT3Q6L9W6 998 aa14.3□□□□□ -0.12
VPS52-213ENST00000461743 METTL16Q86W50 562 aaKnown RBP14.3□□□□□ -0.12
VPS52-213ENST00000461743 ERO1BQ86YB8 467 aa14.3□□□□□ -0.12
VPS52-213ENST00000461743 MAPKAPK5Q8IW41 473 aa14.3□□□□□ -0.12
VPS52-213ENST00000461743 APPBP2Q92624 585 aa14.3□□□□□ -0.12
VPS52-213ENST00000461743 CLMNQ96JQ2 1002 aa14.3□□□□□ -0.12
VPS52-213ENST00000461743 EHD4Q9H223 541 aa14.3□□□□□ -0.12
VPS52-213ENST00000461743 SNCAIPQ9Y6H5 919 aa14.3□□□□□ -0.12
VPS52-213ENST00000461743 GREB1LQ9C091 1923 aaPredicted RBP14.29□□□□□ -0.12
VPS52-213ENST00000461743 RNF113AO15541 343 aaKnown RBP14.29□□□□□ -0.12
VPS52-213ENST00000461743 INHBEP58166 350 aa14.29□□□□□ -0.12
VPS52-213ENST00000461743 KIF23Q02241 960 aaPredicted RBP14.29□□□□□ -0.12
VPS52-213ENST00000461743 MIGA2Q7L4E1 593 aa14.29□□□□□ -0.12
VPS52-213ENST00000461743 EVI5LQ96CN4 794 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms