RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 CNTNAP1P78357 1384 aa12.18□□□□□ -0.46
UPF2-204ENST00000460569 RPAP1Q9BWH6 1393 aaPredicted RBP12.18□□□□□ -0.46
UPF2-204ENST00000460569 SIPA1L1O43166 1804 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 GSG1L2A8MUP6 293 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 ENTPD3O75355 529 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 TDO2P48775 406 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 C8orf34Q49A92 452 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 FKBP1CQ5VVH2 108 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 SULF1Q8IWU6 871 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 ZNF784Q8NCA9 323 aaPredicted RBP12.17□□□□□ -0.46
UPF2-204ENST00000460569 NACAP1Q9BZK3 213 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 OSBPL5Q9H0X9 879 aaPredicted RBP12.17□□□□□ -0.46
UPF2-204ENST00000460569 EPB41L4AQ9HCS5 686 aaPredicted RBP12.17□□□□□ -0.46
UPF2-204ENST00000460569 DCP1AQ9NPI6 582 aaPredicted RBP12.17□□□□□ -0.46
UPF2-204ENST00000460569 ANO2Q9NQ90 1003 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 ATP8A2Q9NTI2 1148 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 SAP30BPQ9UHR5 308 aaKnown RBP12.17□□□□□ -0.46
UPF2-204ENST00000460569 MYH8P13535 1937 aa12.17□□□□□ -0.46
UPF2-204ENST00000460569 COL2A1P02458 1487 aaPredicted RBP12.16□□□□□ -0.46
UPF2-204ENST00000460569 PATL2C9JE40 543 aaKnown RBP12.16□□□□□ -0.46
UPF2-204ENST00000460569 ADM5C9JUS6 153 aa12.16□□□□□ -0.46
UPF2-204ENST00000460569 FOXP2O15409 715 aa12.16□□□□□ -0.46
UPF2-204ENST00000460569 NPM3O75607 178 aaKnown RBP12.16□□□□□ -0.46
UPF2-204ENST00000460569 HSPD1P10809 573 aaKnown RBP12.16□□□□□ -0.46
UPF2-204ENST00000460569 RASA3Q14644 834 aa12.16□□□□□ -0.46
UPF2-204ENST00000460569 SLC4A8Q2Y0W8 1093 aa12.16□□□□□ -0.46
UPF2-204ENST00000460569 KRT26Q7Z3Y9 468 aa12.16□□□□□ -0.46
UPF2-204ENST00000460569 FAM83AQ86UY5 434 aa12.16□□□□□ -0.46
UPF2-204ENST00000460569 ZSCAN29Q8IWY8 852 aaPredicted RBP12.16□□□□□ -0.46
UPF2-204ENST00000460569 DSCC1Q9BVC3 393 aa12.16□□□□□ -0.46
UPF2-204ENST00000460569 NAPBQ9H115 298 aa12.16□□□□□ -0.46
UPF2-204ENST00000460569 MCM9Q9NXL9 1143 aa12.16□□□□□ -0.46
UPF2-204ENST00000460569 PGAP2Q9UHJ9 254 aa12.16□□□□□ -0.46
UPF2-204ENST00000460569 KIF3CO14782 793 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 REC8O95072 547 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 PTH1RQ03431 593 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 MAP1SQ66K74 1059 aaPredicted RBP12.15□□□□□ -0.46
UPF2-204ENST00000460569 GIMAP6Q6P9H5 292 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 ZFPM1Q8IX07 1006 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 AMOTL1Q8IY63 956 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 IFNL3Q8IZI9 196 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 FAM151AQ8WW52 585 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 GLIS2Q9BZE0 524 aaPredicted RBP12.15□□□□□ -0.46
UPF2-204ENST00000460569 TMEM39BQ9GZU3 492 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 LSG1Q9H089 658 aaKnown RBP12.15□□□□□ -0.46
UPF2-204ENST00000460569 DEFB129Q9H1M3 183 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 ARPP21Q9UBL0 812 aaPredicted RBP12.15□□□□□ -0.46
UPF2-204ENST00000460569 PPP2R3BQ9Y5P8 575 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 ATRNL1Q5VV63 1379 aa12.15□□□□□ -0.46
UPF2-204ENST00000460569 ZMYM6O95789 1325 aa12.14□□□□□ -0.47
UPF2-204ENST00000460569 POLR3DP05423 398 aaPredicted RBP12.14□□□□□ -0.47
UPF2-204ENST00000460569 HLA-DOAP06340 250 aa12.14□□□□□ -0.47
UPF2-204ENST00000460569 CHADLQ6NUI6 762 aa12.14□□□□□ -0.47
UPF2-204ENST00000460569 USP48Q86UV5 1035 aa12.14□□□□□ -0.47
UPF2-204ENST00000460569 CSRNP1Q96S65 589 aa12.14□□□□□ -0.47
UPF2-204ENST00000460569 MKRN1Q9UHC7 482 aaKnown RBP12.14□□□□□ -0.47
UPF2-204ENST00000460569 PALD1Q9ULE6 856 aa12.14□□□□□ -0.47
UPF2-204ENST00000460569 TRPM7Q96QT4 1865 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 CYP2D7A0A087X1C5 515 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 DDTLA6NHG4 134 aaPredicted RBP12.13□□□□□ -0.47
UPF2-204ENST00000460569 MINDY4BA8MYZ0 360 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 USP17L12C9JPN9 530 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 USP17L21D6R901 530 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 EIF5BO60841 1220 aaKnown RBP12.13□□□□□ -0.47
UPF2-204ENST00000460569 FGAP02671 866 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 CYP2D6P10635 497 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 ALX1Q15699 326 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 CTR9Q6PD62 1173 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 CDC37L1Q7L3B6 337 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 SH3BP5LQ7L8J4 393 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 CDAN1Q8IWY9 1227 aa12.13□□□□□ -0.47
UPF2-204ENST00000460569 DHX36Q9H2U1 1008 aaKnown RBP12.13□□□□□ -0.47
UPF2-204ENST00000460569 RBM8AQ9Y5S9 174 aaKnown RBP12.13□□□□□ -0.47
UPF2-204ENST00000460569 U3KPZ7 1027 aaPredicted RBP12.13□□□□□ -0.47
UPF2-204ENST00000460569 EVX2Q03828 476 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 SBK1Q52WX2 424 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 PRAMEF18Q5VWM3 479 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 DLK2Q6UY11 383 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 TTC6Q86TZ1 520 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 CRACR2BQ8N4Y2 399 aaPredicted RBP12.12□□□□□ -0.47
UPF2-204ENST00000460569 MAP4K1Q92918 833 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 CDCA5Q96FF9 252 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 TEPSINQ96N21 525 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 CTNNA3Q9UI47 895 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 SSC5DA1L4H1 1573 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 OTOFQ9HC10 1997 aa12.12□□□□□ -0.47
UPF2-204ENST00000460569 ROBO3Q96MS0 1386 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 TRAF5O00463 557 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 SEC24BO95487 1268 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 PLCD1P51178 756 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 HAND2P61296 217 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 PPARAQ07869 468 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 IMMTQ16891 758 aaKnown RBP12.11□□□□□ -0.47
UPF2-204ENST00000460569 NBPF12Q5TAG4 269 aaPredicted RBP12.11□□□□□ -0.47
UPF2-204ENST00000460569 C12orf60Q5U649 245 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 STK11IPQ8N1F8 1099 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 SMC1BQ8NDV3 1235 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 HOOK2Q96ED9 719 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 TRIM34Q9BYJ4 488 aa12.11□□□□□ -0.47
UPF2-204ENST00000460569 PI4KBQ9UBF8 816 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms