RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 PRR12Q9ULL5 1215 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 USP20Q9Y2K6 914 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 COL4A3BPQ9Y5P4 624 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 TET3O43151 1660 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 AFF2P51816 1311 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 KANK1Q14678 1352 aa5.72□□□□□ -1.49
CCDC88A-209ENST00000456975 TULP2O00295 520 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 FAM163BP0C2L3 166 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 IBSPP21815 317 aaPredicted RBP5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 ADD1P35611 737 aaKnown RBP5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 USP5P45974 858 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 KCNJ4P48050 445 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 TBX4P57082 545 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 HSP90B2PQ58FF3 399 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 SOGA3Q5TF21 947 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 LRCH2Q5VUJ6 765 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 DUSP27Q5VZP5 1158 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 LARP1BQ659C4 914 aaKnown RBP5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 ZSCAN30Q86W11 494 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 KLHL23Q8NBE8 558 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 ZDHHC1Q8WTX9 485 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 ERCC4Q92889 916 aaPredicted RBP5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 SRPK1Q96SB4 655 aaKnown RBP5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 KBTBD4Q9NVX7 518 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 CHCHD3Q9NX63 227 aaKnown RBP5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 SCINQ9Y6U3 715 aa5.71□□□□□ -1.49
CCDC88A-209ENST00000456975 USP31Q70CQ4 1352 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 IQGAP3Q86VI3 1631 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 EML1O00423 815 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 PPEF1O14829 653 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 KCNA6P17658 529 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 LMNB1P20700 586 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 NOS2P35228 1153 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 RASSF7Q02833 373 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 TAF1CQ15572 869 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 GJC2Q5T442 439 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 PCGF5Q86SE9 256 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 SKAP1Q86WV1 359 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 TREML1Q86YW5 311 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 CKAP2LQ8IYA6 745 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 ZNF687Q8N1G0 1237 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 CCDC47Q96A33 483 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 ZNF512BQ96KM6 892 aaPredicted RBP5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 RNPC3Q96LT9 517 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 NEUROD6Q96NK8 337 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 C12orf49Q9H741 205 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 CDV3Q9UKY7 258 aaKnown RBP5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 NOS1P29475 1434 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 ADGRB3O60242 1522 aa5.71□□□□□ -1.5
CCDC88A-209ENST00000456975 TK2O00142 265 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 LILRA1O75019 489 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 IL2RAP01589 272 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 SSBP05455 408 aaKnown RBP eCLIP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 USP17L7P0C7H9 530 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 PDE6BP35913 854 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 TRPC1P48995 793 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 SERINC3Q13530 473 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 MTFR1Q15390 333 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 NFE2L2Q16236 605 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 CC2D1AQ6P1N0 951 aaPredicted RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 NXPE4Q6UWF7 544 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 IQCF2Q8IXL9 164 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 VPS37AQ8NEZ2 397 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 FRAT1Q92837 279 aaPredicted RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 KLRG1Q96E93 195 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 CEP63Q96MT8 703 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 AGAP3Q96P47 875 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 CDC5LQ99459 802 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 MTRQ99707 1265 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 PCDH12Q9NPG4 1184 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 G3BP2Q9UN86 482 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 PAXBP1Q9Y5B6 917 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 TMEM2Q9UHN6 1383 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 SETD5Q9C0A6 1442 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 RPRD2Q5VT52 1461 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 NUP155O75694 1391 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 FAM221BA6H8Z2 402 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 XRCC5P13010 732 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 NASPP49321 788 aaPredicted RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 CCDC15Q0P6D6 951 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 KIAA2012Q0VF49 1180 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 TLR1Q15399 786 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 AMOTQ4VCS5 1084 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 DNAJC21Q5F1R6 531 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 RNF187Q5TA31 235 aaPredicted RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 RPUSD2Q8IZ73 545 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 STAG2Q8N3U4 1231 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 SLC26A8Q96RN1 970 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 TRIM56Q9BRZ2 755 aaKnown RBP5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 RMI1Q9H9A7 625 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 BCS1LQ9Y276 419 aa5.7□□□□□ -1.5
CCDC88A-209ENST00000456975 POTEB3A0JP26 581 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 SERTM1A2A2V5 107 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 CPNE3O75131 537 aaKnown RBP5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 POLR3DP05423 398 aaPredicted RBP5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 SKOR1P84550 965 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 RASA3Q14644 834 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 POTEBQ6S5H4 581 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 PHC3Q8NDX5 983 aa5.69□□□□□ -1.5
CCDC88A-209ENST00000456975 TAF4BQ92750 862 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms