RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SSRP1Q08945 709 aaKnown RBP17.48■□□□□ 0.39
LDLR-202ENST00000455727 TRIM29Q14134 588 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 AXDND1Q5T1B0 1012 aaPredicted RBP17.48■□□□□ 0.39
LDLR-202ENST00000455727 AIFM3Q96NN9 605 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 TRIM5Q9C035 493 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 NARFQ9UHQ1 456 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 COL24A1Q17RW2 1714 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 MAGEB6P1A0A0J9YX57 407 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 GOLGA6L19H0YKK7 550 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 SEMA3EO15041 775 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 PPP6R2O75170 966 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 GYG1P46976 350 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 MIGA1Q8NAN2 632 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 SPC24Q8NBT2 197 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 KIAA1524Q8TCG1 905 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 SDF4Q9BRK5 362 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 BCL2L12Q9HB09 334 aa17.48■□□□□ 0.39
LDLR-202ENST00000455727 ERICH2A1L162 156 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 RPS6KA4O75676 772 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 PPARAQ07869 468 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 WTAPQ15007 396 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 C11orf57Q6ZUT1 292 aaPredicted RBP17.47■□□□□ 0.39
LDLR-202ENST00000455727 KCNF1Q9H3M0 494 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 PDS5AQ29RF7 1337 aaKnown RBP17.47■□□□□ 0.39
LDLR-202ENST00000455727 CCDC196A0A1B0GTZ2 297 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 TBC1D9BQ66K14 1250 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 ADGRA1Q86SQ6 560 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 CCDC144CPQ8IYA2 1237 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 JMYQ8N9B5 988 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 FAM84BQ96KN1 310 aaPredicted RBP17.47■□□□□ 0.39
LDLR-202ENST00000455727 NAT10Q9H0A0 1025 aaKnown RBP17.47■□□□□ 0.39
LDLR-202ENST00000455727 RAI14Q9P0K7 980 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 ABCF2Q9UG63 623 aa17.47■□□□□ 0.39
LDLR-202ENST00000455727 COL1A1P02452 1464 aaPredicted RBP17.46■□□□□ 0.39
LDLR-202ENST00000455727 PRKCSHP14314 528 aaPredicted RBP17.46■□□□□ 0.39
LDLR-202ENST00000455727 GTF2E1P29083 439 aaPredicted RBP17.46■□□□□ 0.39
LDLR-202ENST00000455727 PPP2R5BQ15173 497 aa17.46■□□□□ 0.39
LDLR-202ENST00000455727 FBXO33Q7Z6M2 555 aa17.46■□□□□ 0.39
LDLR-202ENST00000455727 TIGD1Q96MW7 591 aa17.46■□□□□ 0.39
LDLR-202ENST00000455727 RIOK1Q9BRS2 568 aaKnown RBP17.46■□□□□ 0.39
LDLR-202ENST00000455727 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.46■□□□□ 0.39
LDLR-202ENST00000455727 KIAA1468Q9P260 1216 aa17.46■□□□□ 0.39
LDLR-202ENST00000455727 ZBTB22O15209 634 aa17.46■□□□□ 0.38
LDLR-202ENST00000455727 CEP57L1Q8IYX8 460 aa17.46■□□□□ 0.38
LDLR-202ENST00000455727 MYL10Q9BUA6 226 aa17.46■□□□□ 0.38
LDLR-202ENST00000455727 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.46■□□□□ 0.38
LDLR-202ENST00000455727 IQSEC3Q9UPP2 1182 aaPredicted RBP17.46■□□□□ 0.38
LDLR-202ENST00000455727 MYH13Q9UKX3 1938 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 BTAF1O14981 1849 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 FAM237AA0A1B0GTK4 181 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 ZNF202O95125 648 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 PCP11498 1178 aaKnown RBP17.45■□□□□ 0.38
LDLR-202ENST00000455727 PIP4K2BP78356 416 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 GNL2Q13823 731 aaKnown RBP17.45■□□□□ 0.38
LDLR-202ENST00000455727 PTPAQ15257 358 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 RTN1Q16799 776 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 RRP12Q5JTH9 1297 aaKnown RBP17.45■□□□□ 0.38
LDLR-202ENST00000455727 TRIM22Q8IYM9 498 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 CELF1Q92879 486 aaKnown RBP17.45■□□□□ 0.38
LDLR-202ENST00000455727 MAP3K14Q99558 947 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 BRIP1Q9BX63 1249 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 SLC26A6Q9BXS9 759 aa17.45■□□□□ 0.38
LDLR-202ENST00000455727 RPS8P62241 208 aaKnown RBP17.44■□□□□ 0.38
LDLR-202ENST00000455727 RBM6P78332 1123 aaKnown RBP17.44■□□□□ 0.38
LDLR-202ENST00000455727 TMED8Q6PL24 325 aaPredicted RBP17.44■□□□□ 0.38
LDLR-202ENST00000455727 ESR2Q92731 530 aa17.44■□□□□ 0.38
LDLR-202ENST00000455727 MRFAP1L1Q96HT8 127 aa17.44■□□□□ 0.38
LDLR-202ENST00000455727 NGLY1Q96IV0 654 aa17.44■□□□□ 0.38
LDLR-202ENST00000455727 NLRP3Q96P20 1036 aa17.44■□□□□ 0.38
LDLR-202ENST00000455727 SETDB2Q96T68 719 aa17.44■□□□□ 0.38
LDLR-202ENST00000455727 BPIFA3Q9BQP9 254 aa17.44■□□□□ 0.38
LDLR-202ENST00000455727 TOMM22Q9NS69 142 aa17.44■□□□□ 0.38
LDLR-202ENST00000455727 BECN2A8MW95 431 aa17.44■□□□□ 0.38
LDLR-202ENST00000455727 WDHD1O75717 1129 aaPredicted RBP17.44■□□□□ 0.38
LDLR-202ENST00000455727 DHX40Q8IX18 779 aaKnown RBP17.44■□□□□ 0.38
LDLR-202ENST00000455727 FNBP4Q8N3X1 1017 aaPredicted RBP17.44■□□□□ 0.38
LDLR-202ENST00000455727 ANKRD2Q9GZV1 360 aa17.44■□□□□ 0.38
LDLR-202ENST00000455727 PFKFB1P16118 471 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 NBPF11Q86T75 865 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 UBAC1Q9BSL1 405 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 NHSQ6T4R5 1651 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 WTIPA6NIX2 430 aaPredicted RBP17.43■□□□□ 0.38
LDLR-202ENST00000455727 DEXIO95424 95 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 FGRP09769 529 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 PTGS1P23219 599 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 SEC23AQ15436 765 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 BICDL1Q6ZP65 573 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 CCDC186Q7Z3E2 898 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 DRC7Q8IY82 874 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 CRACR2BQ8N4Y2 399 aaPredicted RBP17.43■□□□□ 0.38
LDLR-202ENST00000455727 FANCBQ8NB91 859 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 SDR42E1Q8WUS8 393 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 HPSEQ9Y251 543 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 MYH2Q9UKX2 1941 aa17.43■□□□□ 0.38
LDLR-202ENST00000455727 MYH6P13533 1939 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 BAZ2AQ9UIF9 1905 aaKnown RBP17.42■□□□□ 0.38
LDLR-202ENST00000455727 MMP1P03956 469 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 SLC3A2P08195 630 aaKnown RBP17.42■□□□□ 0.38
LDLR-202ENST00000455727 KCNQ4P56696 695 aa17.42■□□□□ 0.38
LDLR-202ENST00000455727 SAFBQ15424 915 aaKnown RBP eCLIP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms