RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 MS4A4AQ96JQ5 239 aa25.99■■□□□ 1.75
HMGB3-205ENST00000455596 ZNF112Q9UJU3 913 aa25.99■■□□□ 1.75
HMGB3-205ENST00000455596 MAP4K4O95819 1239 aaPredicted RBP25.98■■□□□ 1.75
HMGB3-205ENST00000455596 CYP2E1P05181 493 aaPredicted RBP25.98■■□□□ 1.75
HMGB3-205ENST00000455596 INPP5BP32019 993 aa25.98■■□□□ 1.75
HMGB3-205ENST00000455596 RHBDL3P58872 404 aa25.98■■□□□ 1.75
HMGB3-205ENST00000455596 PICALMQ13492 652 aa25.98■■□□□ 1.75
HMGB3-205ENST00000455596 C20orf194Q5TEA3 1177 aa25.98■■□□□ 1.75
HMGB3-205ENST00000455596 CTU1Q7Z7A3 348 aaKnown RBP25.98■■□□□ 1.75
HMGB3-205ENST00000455596 AACSQ86V21 672 aa25.98■■□□□ 1.75
HMGB3-205ENST00000455596 RHPN1Q8TCX5 695 aa25.98■■□□□ 1.75
HMGB3-205ENST00000455596 R3HDMLQ9H3Y0 253 aa25.98■■□□□ 1.75
HMGB3-205ENST00000455596 ZAP70P43403 619 aa25.97■■□□□ 1.75
HMGB3-205ENST00000455596 NAA16Q6N069 864 aaPredicted RBP25.97■■□□□ 1.75
HMGB3-205ENST00000455596 SIRT2Q8IXJ6 389 aa25.97■■□□□ 1.75
HMGB3-205ENST00000455596 PTPN18Q99952 460 aa25.97■■□□□ 1.75
HMGB3-205ENST00000455596 NOL10Q9BSC4 688 aaKnown RBP25.97■■□□□ 1.75
HMGB3-205ENST00000455596 DDX4Q9NQI0 724 aaKnown RBP25.97■■□□□ 1.75
HMGB3-205ENST00000455596 DOCK1Q14185 1865 aa25.97■■□□□ 1.75
HMGB3-205ENST00000455596 IGSF3O75054 1194 aa25.96■■□□□ 1.75
HMGB3-205ENST00000455596 FKTNO75072 461 aa25.96■■□□□ 1.75
HMGB3-205ENST00000455596 KIF1BPQ96EK5 621 aa25.96■■□□□ 1.75
HMGB3-205ENST00000455596 IL1RAPL2Q9NP60 686 aa25.96■■□□□ 1.75
HMGB3-205ENST00000455596 ATRNL1Q5VV63 1379 aa25.95■■□□□ 1.75
HMGB3-205ENST00000455596 CCL15-CCL14A0A0B4J2E2 113 aa25.95■■□□□ 1.74
HMGB3-205ENST00000455596 CCDC85CA6NKD9 419 aa25.95■■□□□ 1.74
HMGB3-205ENST00000455596 NPM3O75607 178 aaKnown RBP25.95■■□□□ 1.74
HMGB3-205ENST00000455596 PPIL2Q13356 520 aa25.95■■□□□ 1.74
HMGB3-205ENST00000455596 CCL15Q16663 113 aa25.95■■□□□ 1.74
HMGB3-205ENST00000455596 SH3BP5LQ7L8J4 393 aa25.95■■□□□ 1.74
HMGB3-205ENST00000455596 BRI3BPQ8WY22 251 aa25.95■■□□□ 1.74
HMGB3-205ENST00000455596 ATAD5Q96QE3 1844 aa25.94■■□□□ 1.74
HMGB3-205ENST00000455596 DDTLA6NHG4 134 aaPredicted RBP25.94■■□□□ 1.74
HMGB3-205ENST00000455596 PPATQ06203 517 aa25.94■■□□□ 1.74
HMGB3-205ENST00000455596 NOL9Q5SY16 702 aaKnown RBP25.94■■□□□ 1.74
HMGB3-205ENST00000455596 CLASRPQ8N2M8 674 aaKnown RBP25.94■■□□□ 1.74
HMGB3-205ENST00000455596 APBB1O00213 710 aa25.93■■□□□ 1.74
HMGB3-205ENST00000455596 IRF6O14896 467 aa25.93■■□□□ 1.74
HMGB3-205ENST00000455596 BAG3O95817 575 aa25.93■■□□□ 1.74
HMGB3-205ENST00000455596 CETPP11597 493 aa25.93■■□□□ 1.74
HMGB3-205ENST00000455596 CRHR2Q13324 411 aa25.93■■□□□ 1.74
HMGB3-205ENST00000455596 PIH1D3Q9NQM4 214 aaKnown RBP25.93■■□□□ 1.74
HMGB3-205ENST00000455596 COL2A1P02458 1487 aaPredicted RBP25.92■■□□□ 1.74
HMGB3-205ENST00000455596 RAB11FIP3O75154 756 aa25.92■■□□□ 1.74
HMGB3-205ENST00000455596 SNAPC2Q13487 334 aa25.92■■□□□ 1.74
HMGB3-205ENST00000455596 TEX11Q8IYF3 940 aa25.92■■□□□ 1.74
HMGB3-205ENST00000455596 PHIPQ8WWQ0 1821 aa25.92■■□□□ 1.74
HMGB3-205ENST00000455596 PLCG2P16885 1265 aa25.91■■□□□ 1.74
HMGB3-205ENST00000455596 MAP3K10Q02779 954 aa25.91■■□□□ 1.74
HMGB3-205ENST00000455596 PKN2Q16513 984 aaKnown RBP25.91■■□□□ 1.74
HMGB3-205ENST00000455596 SH3RF3Q8TEJ3 882 aaPredicted RBP25.91■■□□□ 1.74
HMGB3-205ENST00000455596 AATFQ9NY61 560 aaKnown RBP eCLIP25.91■■□□□ 1.74
HMGB3-205ENST00000455596 PTPRFP10586 1907 aa25.9■■□□□ 1.74
HMGB3-205ENST00000455596 PHF20L1A8MW92 1017 aa25.9■■□□□ 1.74
HMGB3-205ENST00000455596 OSBPL5Q9H0X9 879 aaPredicted RBP25.9■■□□□ 1.74
HMGB3-205ENST00000455596 MYH1P12882 1939 aa25.9■■□□□ 1.74
HMGB3-205ENST00000455596 SIPA1L1O43166 1804 aa25.89■■□□□ 1.74
HMGB3-205ENST00000455596 IDH1O75874 414 aaKnown RBP25.89■■□□□ 1.74
HMGB3-205ENST00000455596 IFIT2P09913 472 aaKnown RBP25.89■■□□□ 1.74
HMGB3-205ENST00000455596 TAF1CQ15572 869 aaPredicted RBP25.89■■□□□ 1.74
HMGB3-205ENST00000455596 ADGRA1Q86SQ6 560 aa25.89■■□□□ 1.74
HMGB3-205ENST00000455596 FAM43AQ8N2R8 423 aa25.89■■□□□ 1.74
HMGB3-205ENST00000455596 PPP4CP60510 307 aa25.88■■□□□ 1.73
HMGB3-205ENST00000455596 SCYL3Q8IZE3 742 aa25.88■■□□□ 1.73
HMGB3-205ENST00000455596 ZFYVE28Q9HCC9 887 aa25.88■■□□□ 1.73
HMGB3-205ENST00000455596 ZCCHC17Q9NP64 241 aaKnown RBP25.88■■□□□ 1.73
HMGB3-205ENST00000455596 NDUFB9Q9Y6M9 179 aa25.88■■□□□ 1.73
HMGB3-205ENST00000455596 TBC1D12O60347 775 aa25.87■■□□□ 1.73
HMGB3-205ENST00000455596 CYP7A1P22680 504 aa25.87■■□□□ 1.73
HMGB3-205ENST00000455596 PICK1Q9NRD5 415 aa25.87■■□□□ 1.73
HMGB3-205ENST00000455596 KCNH4Q9UQ05 1017 aa25.87■■□□□ 1.73
HMGB3-205ENST00000455596 BTBD19C9JJ37 291 aa25.86■■□□□ 1.73
HMGB3-205ENST00000455596 CTNND1O60716 968 aaKnown RBP25.86■■□□□ 1.73
HMGB3-205ENST00000455596 MAP3K12Q12852 859 aa25.86■■□□□ 1.73
HMGB3-205ENST00000455596 ERO1AQ96HE7 468 aa25.86■■□□□ 1.73
HMGB3-205ENST00000455596 BCL11AQ9H165 835 aa25.86■■□□□ 1.73
HMGB3-205ENST00000455596 ANTXR1Q9H6X2 564 aa25.86■■□□□ 1.73
HMGB3-205ENST00000455596 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.86■■□□□ 1.73
HMGB3-205ENST00000455596 MYH7P12883 1935 aa25.85■■□□□ 1.73
HMGB3-205ENST00000455596 SLURP2P0DP57 97 aa25.85■■□□□ 1.73
HMGB3-205ENST00000455596 TTF1Q15361 905 aaPredicted RBP25.85■■□□□ 1.73
HMGB3-205ENST00000455596 PPIL4Q8WUA2 492 aaKnown RBP eCLIP25.85■■□□□ 1.73
HMGB3-205ENST00000455596 TGFBRAP1Q8WUH2 860 aa25.85■■□□□ 1.73
HMGB3-205ENST00000455596 PTPRAP18433 802 aa25.84■■□□□ 1.73
HMGB3-205ENST00000455596 SP3Q02447 781 aa25.84■■□□□ 1.73
HMGB3-205ENST00000455596 TMED8Q6PL24 325 aaPredicted RBP25.84■■□□□ 1.73
HMGB3-205ENST00000455596 MAGEB6Q8N7X4 407 aa25.84■■□□□ 1.73
HMGB3-205ENST00000455596 DHX36Q9H2U1 1008 aaKnown RBP25.84■■□□□ 1.73
HMGB3-205ENST00000455596 FBXO46Q6PJ61 603 aaPredicted RBP25.83■■□□□ 1.73
HMGB3-205ENST00000455596 CERS3Q8IU89 383 aa25.83■■□□□ 1.73
HMGB3-205ENST00000455596 MAPKAPK5Q8IW41 473 aa25.83■■□□□ 1.73
HMGB3-205ENST00000455596 FAM196BA6NMK8 535 aa25.82■■□□□ 1.72
HMGB3-205ENST00000455596 CXCL11O14625 94 aa25.82■■□□□ 1.72
HMGB3-205ENST00000455596 DYNLL1P63167 89 aaKnown RBP25.82■■□□□ 1.72
HMGB3-205ENST00000455596 ANKRD23Q86SG2 305 aa25.82■■□□□ 1.72
HMGB3-205ENST00000455596 CD99L2Q8TCZ2 262 aa25.82■■□□□ 1.72
HMGB3-205ENST00000455596 LRRCC1Q9C099 1032 aa25.82■■□□□ 1.72
HMGB3-205ENST00000455596 PI4KBQ9UBF8 816 aa25.82■■□□□ 1.72
HMGB3-205ENST00000455596 HPS5Q9UPZ3 1129 aa25.82■■□□□ 1.72
HMGB3-205ENST00000455596 TRIM17Q9Y577 477 aa25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms