RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 CDC42EP5Q6NZY7 148 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 AGBL3Q8NEM8 1001 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 NBPF3Q9H094 633 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 INCENPQ9NQS7 918 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 MKRN1Q9UHC7 482 aaKnown RBP13.14□□□□□ -0.31
SCN9A-205ENST00000454569 SNX14Q9Y5W7 946 aa13.14□□□□□ -0.31
SCN9A-205ENST00000454569 SIPA1L1O43166 1804 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 APPP05067 770 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 HAND2P61296 217 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 PDAP1Q13442 181 aaKnown RBP13.13□□□□□ -0.31
SCN9A-205ENST00000454569 TNIP1Q15025 636 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 ADCK5Q3MIX3 580 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 STOX1Q6ZVD7 989 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 TGFBRAP1Q8WUH2 860 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 KCNB2Q92953 911 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 TEKT1Q969V4 418 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 ZDHHC15Q96MV8 337 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 MRIQ9BWK5 157 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 DDX4Q9NQI0 724 aaKnown RBP13.13□□□□□ -0.31
SCN9A-205ENST00000454569 PCDHB8Q9UN66 801 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 PCDHB13Q9Y5F0 798 aa13.13□□□□□ -0.31
SCN9A-205ENST00000454569 USP17L8P0C7I0 530 aa13.12□□□□□ -0.31
SCN9A-205ENST00000454569 CYP2D6P10635 497 aa13.12□□□□□ -0.31
SCN9A-205ENST00000454569 RBM5P52756 815 aaKnown RBP eCLIP13.12□□□□□ -0.31
SCN9A-205ENST00000454569 SLC4A8Q2Y0W8 1093 aa13.12□□□□□ -0.31
SCN9A-205ENST00000454569 SAMD7Q7Z3H4 446 aa13.12□□□□□ -0.31
SCN9A-205ENST00000454569 MAPKAPK5Q8IW41 473 aa13.12□□□□□ -0.31
SCN9A-205ENST00000454569 TDRD3Q9H7E2 651 aaKnown RBP13.12□□□□□ -0.31
SCN9A-205ENST00000454569 DCP1AQ9NPI6 582 aaPredicted RBP13.12□□□□□ -0.31
SCN9A-205ENST00000454569 USP40Q9NVE5 1235 aa13.12□□□□□ -0.31
SCN9A-205ENST00000454569 SERPINA10Q9UK55 444 aa13.12□□□□□ -0.31
SCN9A-205ENST00000454569 ASTN2O75129 1339 aaPredicted RBP13.12□□□□□ -0.31
SCN9A-205ENST00000454569 MYO3BQ8WXR4 1341 aa13.12□□□□□ -0.31
SCN9A-205ENST00000454569 GRIN3BO60391 1043 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 IGSF3O75054 1194 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 WDHD1O75717 1129 aaPredicted RBP13.11□□□□□ -0.31
SCN9A-205ENST00000454569 SLURP2P0DP57 97 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 CPA1P15085 419 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 HDLBPQ00341 1268 aaKnown RBP13.11□□□□□ -0.31
SCN9A-205ENST00000454569 NFIAQ12857 509 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 ZFPM1Q8IX07 1006 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 TEX11Q8IYF3 940 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 ZBED3Q96IU2 234 aaPredicted RBP13.11□□□□□ -0.31
SCN9A-205ENST00000454569 UPF2Q9HAU5 1272 aaKnown RBP13.11□□□□□ -0.31
SCN9A-205ENST00000454569 CNOT7Q9UIV1 285 aaKnown RBP13.11□□□□□ -0.31
SCN9A-205ENST00000454569 SCAF8Q9UPN6 1271 aaKnown RBP13.11□□□□□ -0.31
SCN9A-205ENST00000454569 EPB41L2O43491 1005 aaKnown RBP13.11□□□□□ -0.31
SCN9A-205ENST00000454569 BAG3O95817 575 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 EPS15P42566 896 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 CTDSPL2Q05D32 466 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 NBR1Q14596 966 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 ALX1Q15699 326 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 NBPF9Q3BBW0 867 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 RBM26Q5T8P6 1007 aaKnown RBP13.11□□□□□ -0.31
SCN9A-205ENST00000454569 CTR9Q6PD62 1173 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 TMED8Q6PL24 325 aaPredicted RBP13.11□□□□□ -0.31
SCN9A-205ENST00000454569 SLF2Q8IX21 1173 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 MICALL2Q8IY33 904 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 STK11IPQ8N1F8 1099 aa13.11□□□□□ -0.31
SCN9A-205ENST00000454569 CRNKL1Q9BZJ0 848 aaKnown RBP13.11□□□□□ -0.31
SCN9A-205ENST00000454569 MYH8P13535 1937 aa13.1□□□□□ -0.31
SCN9A-205ENST00000454569 RPAP1Q9BWH6 1393 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-205ENST00000454569 GNAT2P19087 354 aa13.1□□□□□ -0.31
SCN9A-205ENST00000454569 ZNF280AP59817 542 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-205ENST00000454569 TBC1D10BQ4KMP7 808 aaPredicted RBP13.1□□□□□ -0.31
SCN9A-205ENST00000454569 TBC1D10CQ8IV04 446 aa13.1□□□□□ -0.31
SCN9A-205ENST00000454569 GPC2Q8N158 579 aa13.1□□□□□ -0.31
SCN9A-205ENST00000454569 DPF2Q92785 391 aa13.1□□□□□ -0.31
SCN9A-205ENST00000454569 MYOZ2Q9NPC6 264 aa13.1□□□□□ -0.31
SCN9A-205ENST00000454569 SAP30BPQ9UHR5 308 aaKnown RBP13.1□□□□□ -0.31
SCN9A-205ENST00000454569 CLRN2A0PK11 232 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 USP17L12C9JPN9 530 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 USP17L21D6R901 530 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 CD2BP2O95400 341 aaKnown RBP13.09□□□□□ -0.31
SCN9A-205ENST00000454569 USP5P45974 858 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 TDO2P48775 406 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 PICALMQ13492 652 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 TRPM4Q8TD43 1214 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 IL17RAQ96F46 866 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 NAPBQ9H115 298 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 GPRC5DQ9NZD1 345 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 FAM198AQ9UFP1 575 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 FLT1P17948 1338 aa13.09□□□□□ -0.31
SCN9A-205ENST00000454569 MINDY4BA8MYZ0 360 aa13.08□□□□□ -0.32
SCN9A-205ENST00000454569 WNT10BO00744 389 aa13.08□□□□□ -0.32
SCN9A-205ENST00000454569 RPS12P25398 132 aaKnown RBP13.08□□□□□ -0.32
SCN9A-205ENST00000454569 PLCD1P51178 756 aa13.08□□□□□ -0.32
SCN9A-205ENST00000454569 HIRAP54198 1017 aaPredicted RBP13.08□□□□□ -0.32
SCN9A-205ENST00000454569 DLGAP5Q15398 846 aa13.08□□□□□ -0.32
SCN9A-205ENST00000454569 OGFOD1Q8N543 542 aa13.08□□□□□ -0.32
SCN9A-205ENST00000454569 ZNF579Q8NAF0 562 aaKnown RBP13.08□□□□□ -0.32
SCN9A-205ENST00000454569 MTMR14Q8NCE2 650 aa13.08□□□□□ -0.32
SCN9A-205ENST00000454569 NOL10Q9BSC4 688 aaKnown RBP13.08□□□□□ -0.32
SCN9A-205ENST00000454569 ATP8A2Q9NTI2 1148 aa13.08□□□□□ -0.32
SCN9A-205ENST00000454569 ZNF70Q9UC06 446 aaPredicted RBP13.08□□□□□ -0.32
SCN9A-205ENST00000454569 E7EWF7 191 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 TCP10Q12799 353 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 TSGA10IPQ3SY00 556 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 SH3BP5LQ7L8J4 393 aa13.07□□□□□ -0.32
SCN9A-205ENST00000454569 DYNLL2Q96FJ2 89 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms