RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 PPIL2Q13356 520 aa14.78□□□□□ -0.04
USP40-210ENST00000454354 NOL9Q5SY16 702 aaKnown RBP14.78□□□□□ -0.04
USP40-210ENST00000454354 MIGA2Q7L4E1 593 aa14.78□□□□□ -0.04
USP40-210ENST00000454354 ERC1Q8IUD2 1116 aa14.78□□□□□ -0.04
USP40-210ENST00000454354 RPAP2Q8IXW5 612 aaPredicted RBP14.78□□□□□ -0.04
USP40-210ENST00000454354 BRI3BPQ8WY22 251 aa14.78□□□□□ -0.04
USP40-210ENST00000454354 EAF2Q96CJ1 260 aaPredicted RBP14.78□□□□□ -0.04
USP40-210ENST00000454354 OTUD5Q96G74 571 aa14.78□□□□□ -0.04
USP40-210ENST00000454354 DDX4Q9NQI0 724 aaKnown RBP14.78□□□□□ -0.04
USP40-210ENST00000454354 TLR7Q9NYK1 1049 aaKnown RBP14.78□□□□□ -0.04
USP40-210ENST00000454354 EXOC6BQ9Y2D4 811 aa14.78□□□□□ -0.04
USP40-210ENST00000454354 COG6Q9Y2V7 657 aa14.78□□□□□ -0.04
USP40-210ENST00000454354 MYH7P12883 1935 aa14.78□□□□□ -0.04
USP40-210ENST00000454354 FKTNO75072 461 aa14.77□□□□□ -0.05
USP40-210ENST00000454354 CYP2E1P05181 493 aaPredicted RBP14.77□□□□□ -0.05
USP40-210ENST00000454354 INPP5BP32019 993 aa14.77□□□□□ -0.05
USP40-210ENST00000454354 MAP3K10Q02779 954 aa14.77□□□□□ -0.05
USP40-210ENST00000454354 PPATQ06203 517 aa14.77□□□□□ -0.05
USP40-210ENST00000454354 SH3BP5LQ7L8J4 393 aa14.77□□□□□ -0.05
USP40-210ENST00000454354 CHMP4BQ9H444 224 aaKnown RBP14.77□□□□□ -0.05
USP40-210ENST00000454354 RAI14Q9P0K7 980 aa14.77□□□□□ -0.05
USP40-210ENST00000454354 CCL15-CCL14A0A0B4J2E2 113 aa14.76□□□□□ -0.05
USP40-210ENST00000454354 CRHR2Q13324 411 aa14.76□□□□□ -0.05
USP40-210ENST00000454354 PDE3AQ14432 1141 aa14.76□□□□□ -0.05
USP40-210ENST00000454354 PKN2Q16513 984 aaKnown RBP14.76□□□□□ -0.05
USP40-210ENST00000454354 CCL15Q16663 113 aa14.76□□□□□ -0.05
USP40-210ENST00000454354 HSP90AB4PQ58FF6 505 aa14.76□□□□□ -0.05
USP40-210ENST00000454354 SNRKQ9NRH2 765 aa14.76□□□□□ -0.05
USP40-210ENST00000454354 LRP2BPQ9P2M1 347 aa14.76□□□□□ -0.05
USP40-210ENST00000454354 RBBP6Q7Z6E9 1792 aaKnown RBP14.75□□□□□ -0.05
USP40-210ENST00000454354 DDX60LQ5H9U9 1706 aaKnown RBP14.75□□□□□ -0.05
USP40-210ENST00000454354 TNRC18O15417 2968 aaPredicted RBP14.75□□□□□ -0.05
USP40-210ENST00000454354 DDTLA6NHG4 134 aaPredicted RBP14.75□□□□□ -0.05
USP40-210ENST00000454354 CCDC85CA6NKD9 419 aa14.75□□□□□ -0.05
USP40-210ENST00000454354 PHF20L1A8MW92 1017 aa14.75□□□□□ -0.05
USP40-210ENST00000454354 IRF6O14896 467 aa14.75□□□□□ -0.05
USP40-210ENST00000454354 HMMRO75330 724 aa14.75□□□□□ -0.05
USP40-210ENST00000454354 CETPP11597 493 aa14.75□□□□□ -0.05
USP40-210ENST00000454354 SIRT2Q8IXJ6 389 aa14.75□□□□□ -0.05
USP40-210ENST00000454354 CCDC8Q9H0W5 538 aaPredicted RBP14.75□□□□□ -0.05
USP40-210ENST00000454354 ZCCHC17Q9NP64 241 aaKnown RBP14.75□□□□□ -0.05
USP40-210ENST00000454354 LOC285556D6RIA3 1793 aa14.75□□□□□ -0.05
USP40-210ENST00000454354 ZSWIM8A7E2V4 1837 aa14.74□□□□□ -0.05
USP40-210ENST00000454354 ZAP70P43403 619 aa14.74□□□□□ -0.05
USP40-210ENST00000454354 SNAPC2Q13487 334 aa14.74□□□□□ -0.05
USP40-210ENST00000454354 PICALMQ13492 652 aa14.74□□□□□ -0.05
USP40-210ENST00000454354 FAM43AQ8N2R8 423 aa14.74□□□□□ -0.05
USP40-210ENST00000454354 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.74□□□□□ -0.05
USP40-210ENST00000454354 RHPN1Q8TCX5 695 aa14.74□□□□□ -0.05
USP40-210ENST00000454354 KCNH4Q9UQ05 1017 aa14.74□□□□□ -0.05
USP40-210ENST00000454354 MGAMO43451 1857 aa14.74□□□□□ -0.05
USP40-210ENST00000454354 NAV1Q8NEY1 1877 aa14.74□□□□□ -0.05
USP40-210ENST00000454354 TBC1D12O60347 775 aa14.73□□□□□ -0.05
USP40-210ENST00000454354 RGS19P49795 217 aa14.73□□□□□ -0.05
USP40-210ENST00000454354 PPP4CP60510 307 aa14.73□□□□□ -0.05
USP40-210ENST00000454354 TAF1CQ15572 869 aaPredicted RBP14.73□□□□□ -0.05
USP40-210ENST00000454354 C20orf194Q5TEA3 1177 aa14.73□□□□□ -0.05
USP40-210ENST00000454354 NAA16Q6N069 864 aaPredicted RBP14.73□□□□□ -0.05
USP40-210ENST00000454354 AACSQ86V21 672 aa14.73□□□□□ -0.05
USP40-210ENST00000454354 ZSCAN29Q8IWY8 852 aaPredicted RBP14.73□□□□□ -0.05
USP40-210ENST00000454354 OSBPL5Q9H0X9 879 aaPredicted RBP14.73□□□□□ -0.05
USP40-210ENST00000454354 PIH1D3Q9NQM4 214 aaKnown RBP14.73□□□□□ -0.05
USP40-210ENST00000454354 CENPFP49454 3210 aa14.72□□□□□ -0.05
USP40-210ENST00000454354 PLCG2P16885 1265 aa14.72□□□□□ -0.05
USP40-210ENST00000454354 FBXO46Q6PJ61 603 aaPredicted RBP14.72□□□□□ -0.05
USP40-210ENST00000454354 TMED8Q6PL24 325 aaPredicted RBP14.72□□□□□ -0.05
USP40-210ENST00000454354 ADGRA1Q86SQ6 560 aa14.72□□□□□ -0.05
USP40-210ENST00000454354 TEX11Q8IYF3 940 aa14.72□□□□□ -0.05
USP40-210ENST00000454354 SCYL3Q8IZE3 742 aa14.72□□□□□ -0.05
USP40-210ENST00000454354 KIF1BPQ96EK5 621 aa14.72□□□□□ -0.05
USP40-210ENST00000454354 ERO1AQ96HE7 468 aa14.72□□□□□ -0.05
USP40-210ENST00000454354 NOL10Q9BSC4 688 aaKnown RBP14.72□□□□□ -0.05
USP40-210ENST00000454354 ZFYVE28Q9HCC9 887 aa14.72□□□□□ -0.05
USP40-210ENST00000454354 HPS5Q9UPZ3 1129 aa14.72□□□□□ -0.05
USP40-210ENST00000454354 BTBD19C9JJ37 291 aa14.71□□□□□ -0.05
USP40-210ENST00000454354 BAG3O95817 575 aa14.71□□□□□ -0.05
USP40-210ENST00000454354 MOGSQ13724 837 aa14.71□□□□□ -0.05
USP40-210ENST00000454354 SH3RF3Q8TEJ3 882 aaPredicted RBP14.71□□□□□ -0.05
USP40-210ENST00000454354 IL1RAPL2Q9NP60 686 aa14.71□□□□□ -0.05
USP40-210ENST00000454354 AATFQ9NY61 560 aaKnown RBP eCLIP14.71□□□□□ -0.05
USP40-210ENST00000454354 CXCL11O14625 94 aa14.7□□□□□ -0.06
USP40-210ENST00000454354 CTNND1O60716 968 aaKnown RBP14.7□□□□□ -0.06
USP40-210ENST00000454354 RAB11FIP3O75154 756 aa14.7□□□□□ -0.06
USP40-210ENST00000454354 SP3Q02447 781 aa14.7□□□□□ -0.06
USP40-210ENST00000454354 OTOP1Q7RTM1 612 aa14.7□□□□□ -0.06
USP40-210ENST00000454354 ANKRD23Q86SG2 305 aa14.7□□□□□ -0.06
USP40-210ENST00000454354 CLASRPQ8N2M8 674 aaKnown RBP14.7□□□□□ -0.06
USP40-210ENST00000454354 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.7□□□□□ -0.06
USP40-210ENST00000454354 MYH8P13535 1937 aa14.7□□□□□ -0.06
USP40-210ENST00000454354 FLT1P17948 1338 aa14.69□□□□□ -0.06
USP40-210ENST00000454354 PDE4DIPQ5VU43 2346 aa14.69□□□□□ -0.06
USP40-210ENST00000454354 TLR2O60603 784 aa14.69□□□□□ -0.06
USP40-210ENST00000454354 SLURP2P0DP57 97 aa14.69□□□□□ -0.06
USP40-210ENST00000454354 PTPRAP18433 802 aa14.69□□□□□ -0.06
USP40-210ENST00000454354 CD99L2Q8TCZ2 262 aa14.69□□□□□ -0.06
USP40-210ENST00000454354 DHX36Q9H2U1 1008 aaKnown RBP14.69□□□□□ -0.06
USP40-210ENST00000454354 HERC5Q9UII4 1024 aaKnown RBP14.69□□□□□ -0.06
USP40-210ENST00000454354 NDUFB9Q9Y6M9 179 aa14.69□□□□□ -0.06
USP40-210ENST00000454354 ADGRA2Q96PE1 1338 aa14.68□□□□□ -0.06
USP40-210ENST00000454354 A0A0G2JLL6 359 aaPredicted RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms