RNA–Protein interactions for RNA: ENST00000449684.6

LIMS1-210, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 492 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-210ENST00000449684 ZFPM1Q8IX07 1006 aa18.96■□□□□ 0.63
LIMS1-210ENST00000449684 CLASRPQ8N2M8 674 aaKnown RBP18.96■□□□□ 0.63
LIMS1-210ENST00000449684 RHPN1Q8TCX5 695 aa18.96■□□□□ 0.63
LIMS1-210ENST00000449684 IL1RAPL2Q9NP60 686 aa18.96■□□□□ 0.63
LIMS1-210ENST00000449684 TLR7Q9NYK1 1049 aaKnown RBP18.96■□□□□ 0.63
LIMS1-210ENST00000449684 SNCAIPQ9Y6H5 919 aa18.96■□□□□ 0.63
LIMS1-210ENST00000449684 CYP2E1P05181 493 aaPredicted RBP18.95■□□□□ 0.62
LIMS1-210ENST00000449684 INPP5BP32019 993 aa18.95■□□□□ 0.62
LIMS1-210ENST00000449684 C20orf194Q5TEA3 1177 aa18.95■□□□□ 0.62
LIMS1-210ENST00000449684 KIF1BPQ96EK5 621 aa18.95■□□□□ 0.62
LIMS1-210ENST00000449684 YTHDC1Q96MU7 727 aaKnown RBP18.95■□□□□ 0.62
LIMS1-210ENST00000449684 CFHR5Q9BXR6 569 aa18.95■□□□□ 0.62
LIMS1-210ENST00000449684 TESPA1A2RU30 521 aaPredicted RBP18.94■□□□□ 0.62
LIMS1-210ENST00000449684 RAB11FIP3O75154 756 aa18.94■□□□□ 0.62
LIMS1-210ENST00000449684 IFIT2P09913 472 aaKnown RBP18.94■□□□□ 0.62
LIMS1-210ENST00000449684 SNAPC2Q13487 334 aa18.94■□□□□ 0.62
LIMS1-210ENST00000449684 NOM1Q5C9Z4 860 aaKnown RBP18.94■□□□□ 0.62
LIMS1-210ENST00000449684 TEX11Q8IYF3 940 aa18.94■□□□□ 0.62
LIMS1-210ENST00000449684 ZNF384Q8TF68 577 aa18.94■□□□□ 0.62
LIMS1-210ENST00000449684 IGSF3O75054 1194 aa18.93■□□□□ 0.62
LIMS1-210ENST00000449684 IDH1O75874 414 aaKnown RBP18.93■□□□□ 0.62
LIMS1-210ENST00000449684 CETPP11597 493 aa18.93■□□□□ 0.62
LIMS1-210ENST00000449684 PLCG2P16885 1265 aa18.93■□□□□ 0.62
LIMS1-210ENST00000449684 RHBDL3P58872 404 aa18.93■□□□□ 0.62
LIMS1-210ENST00000449684 PPATQ06203 517 aa18.93■□□□□ 0.62
LIMS1-210ENST00000449684 PPIL2Q13356 520 aa18.93■□□□□ 0.62
LIMS1-210ENST00000449684 MS4A4AQ96JQ5 239 aa18.93■□□□□ 0.62
LIMS1-210ENST00000449684 R3HDMLQ9H3Y0 253 aa18.93■□□□□ 0.62
LIMS1-210ENST00000449684 DDX4Q9NQI0 724 aaKnown RBP18.93■□□□□ 0.62
LIMS1-210ENST00000449684 AATFQ9NY61 560 aaKnown RBP eCLIP18.93■□□□□ 0.62
LIMS1-210ENST00000449684 ZNF112Q9UJU3 913 aa18.93■□□□□ 0.62
LIMS1-210ENST00000449684 DDTLA6NHG4 134 aaPredicted RBP18.92■□□□□ 0.62
LIMS1-210ENST00000449684 IRF6O14896 467 aa18.92■□□□□ 0.62
LIMS1-210ENST00000449684 PKN2Q16513 984 aaKnown RBP18.92■□□□□ 0.62
LIMS1-210ENST00000449684 BRI3BPQ8WY22 251 aa18.92■□□□□ 0.62
LIMS1-210ENST00000449684 PTPN18Q99952 460 aa18.92■□□□□ 0.62
LIMS1-210ENST00000449684 PICK1Q9NRD5 415 aa18.92■□□□□ 0.62
LIMS1-210ENST00000449684 CRHR2Q13324 411 aa18.91■□□□□ 0.62
LIMS1-210ENST00000449684 TAF1CQ15572 869 aaPredicted RBP18.91■□□□□ 0.62
LIMS1-210ENST00000449684 SIRT2Q8IXJ6 389 aa18.91■□□□□ 0.62
LIMS1-210ENST00000449684 ZFYVE28Q9HCC9 887 aa18.91■□□□□ 0.62
LIMS1-210ENST00000449684 PIH1D3Q9NQM4 214 aaKnown RBP18.91■□□□□ 0.62
LIMS1-210ENST00000449684 NPM3O75607 178 aaKnown RBP18.9■□□□□ 0.62
LIMS1-210ENST00000449684 CYP7A1P22680 504 aa18.9■□□□□ 0.62
LIMS1-210ENST00000449684 MAP3K12Q12852 859 aa18.9■□□□□ 0.62
LIMS1-210ENST00000449684 SH3BP5LQ7L8J4 393 aa18.9■□□□□ 0.62
LIMS1-210ENST00000449684 SH3RF3Q8TEJ3 882 aaPredicted RBP18.9■□□□□ 0.62
LIMS1-210ENST00000449684 OSBPL5Q9H0X9 879 aaPredicted RBP18.9■□□□□ 0.62
LIMS1-210ENST00000449684 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.9■□□□□ 0.62
LIMS1-210ENST00000449684 RFX7Q2KHR2 1363 aa18.9■□□□□ 0.62
LIMS1-210ENST00000449684 TTF1Q15361 905 aaPredicted RBP18.89■□□□□ 0.61
LIMS1-210ENST00000449684 NOL9Q5SY16 702 aaKnown RBP18.89■□□□□ 0.61
LIMS1-210ENST00000449684 ERO1AQ96HE7 468 aa18.89■□□□□ 0.61
LIMS1-210ENST00000449684 NDUFB9Q9Y6M9 179 aa18.89■□□□□ 0.61
LIMS1-210ENST00000449684 DOCK2Q92608 1830 aa18.88■□□□□ 0.61
LIMS1-210ENST00000449684 PPP4CP60510 307 aa18.88■□□□□ 0.61
LIMS1-210ENST00000449684 SCYL3Q8IZE3 742 aa18.88■□□□□ 0.61
LIMS1-210ENST00000449684 FAM43AQ8N2R8 423 aa18.88■□□□□ 0.61
LIMS1-210ENST00000449684 MAGEB6Q8N7X4 407 aa18.88■□□□□ 0.61
LIMS1-210ENST00000449684 TGFBRAP1Q8WUH2 860 aa18.88■□□□□ 0.61
LIMS1-210ENST00000449684 TRIM34Q9BYJ4 488 aa18.88■□□□□ 0.61
LIMS1-210ENST00000449684 CTNND1O60716 968 aaKnown RBP18.87■□□□□ 0.61
LIMS1-210ENST00000449684 LAMB1P07942 1786 aa18.87■□□□□ 0.61
LIMS1-210ENST00000449684 SP3Q02447 781 aa18.87■□□□□ 0.61
LIMS1-210ENST00000449684 CERS3Q8IU89 383 aa18.87■□□□□ 0.61
LIMS1-210ENST00000449684 MAPKAPK5Q8IW41 473 aa18.87■□□□□ 0.61
LIMS1-210ENST00000449684 DNAJC2Q99543 621 aaKnown RBP18.87■□□□□ 0.61
LIMS1-210ENST00000449684 LRRCC1Q9C099 1032 aa18.87■□□□□ 0.61
LIMS1-210ENST00000449684 DHX36Q9H2U1 1008 aaKnown RBP18.87■□□□□ 0.61
LIMS1-210ENST00000449684 ZHX2Q9Y6X8 837 aa18.87■□□□□ 0.61
LIMS1-210ENST00000449684 MAST2Q6P0Q8 1798 aa18.86■□□□□ 0.61
LIMS1-210ENST00000449684 ATRNL1Q5VV63 1379 aa18.86■□□□□ 0.61
LIMS1-210ENST00000449684 PHF20L1A8MW92 1017 aa18.86■□□□□ 0.61
LIMS1-210ENST00000449684 BTBD19C9JJ37 291 aa18.86■□□□□ 0.61
LIMS1-210ENST00000449684 TBC1D12O60347 775 aa18.86■□□□□ 0.61
LIMS1-210ENST00000449684 ARHGEF6Q15052 776 aa18.86■□□□□ 0.61
LIMS1-210ENST00000449684 ADGRA1Q86SQ6 560 aa18.86■□□□□ 0.61
LIMS1-210ENST00000449684 ANTXR1Q9H6X2 564 aa18.86■□□□□ 0.61
LIMS1-210ENST00000449684 ZCCHC17Q9NP64 241 aaKnown RBP18.86■□□□□ 0.61
LIMS1-210ENST00000449684 PI4KBQ9UBF8 816 aa18.86■□□□□ 0.61
LIMS1-210ENST00000449684 TRIM17Q9Y577 477 aa18.86■□□□□ 0.61
LIMS1-210ENST00000449684 FAM196BA6NMK8 535 aa18.85■□□□□ 0.61
LIMS1-210ENST00000449684 CXCL11O14625 94 aa18.85■□□□□ 0.61
LIMS1-210ENST00000449684 USP5P45974 858 aa18.85■□□□□ 0.61
LIMS1-210ENST00000449684 DYNLL1P63167 89 aaKnown RBP18.85■□□□□ 0.61
LIMS1-210ENST00000449684 MAP3K10Q02779 954 aa18.85■□□□□ 0.61
LIMS1-210ENST00000449684 TMED8Q6PL24 325 aaPredicted RBP18.85■□□□□ 0.61
LIMS1-210ENST00000449684 CRACR2BQ8N4Y2 399 aaPredicted RBP18.85■□□□□ 0.61
LIMS1-210ENST00000449684 MIGA1Q8NAN2 632 aa18.85■□□□□ 0.61
LIMS1-210ENST00000449684 CD99L2Q8TCZ2 262 aa18.85■□□□□ 0.61
LIMS1-210ENST00000449684 KCNH4Q9UQ05 1017 aa18.85■□□□□ 0.61
LIMS1-210ENST00000449684 GOLIM4O00461 696 aa18.84■□□□□ 0.61
LIMS1-210ENST00000449684 HLA-DOAP06340 250 aa18.84■□□□□ 0.61
LIMS1-210ENST00000449684 SLURP2P0DP57 97 aa18.84■□□□□ 0.61
LIMS1-210ENST00000449684 PTPRAP18433 802 aa18.84■□□□□ 0.61
LIMS1-210ENST00000449684 FBXO46Q6PJ61 603 aaPredicted RBP18.84■□□□□ 0.61
LIMS1-210ENST00000449684 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.84■□□□□ 0.61
LIMS1-210ENST00000449684 HERC5Q9UII4 1024 aaKnown RBP18.84■□□□□ 0.61
LIMS1-210ENST00000449684 HPS5Q9UPZ3 1129 aa18.84■□□□□ 0.61
LIMS1-210ENST00000449684 COL2A1P02458 1487 aaPredicted RBP18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms